Prof Timothy Cootes

Research Fellow

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Publications

  1. 2020
  2. Published

    An automated workflow based on hip shape improves personalized risk prediction for hip osteoarthritis in the CHECK study.

    Gielis, W. P., Weinans, H. H., Welsing, P. M. J., van Spil, W. E., Agricola, R., Cootes, T., de Jong, P. A. & Lindner, C., 2020, In : Osteoarthritis and cartilage / OARS, Osteoarthritis Research Society. 28, 1, p. 62-70

    Research output: Contribution to journalArticle

  3. 2019
  4. Published

    A New Innovative Software to Automatically Outline Condyles In Orthopantomography

    Krishnakumar Raja, V. B., Sasikala, B., Elavenil, P., Sethupathy Cheeman, R., Cootes, T. & Lindner, C., 1 Nov 2019, In : International Journal of Medical Science and Innovative Research. 4, 6, p. 123-134

    Research output: Contribution to journalArticle

  5. Published

    A Hybrid Machine Learning Approach Using LBP Descriptor and PCA for Age-Related Macular Degeneration Classification in OCTA Images

    Alfahaid, A., Morris, T., Cootes, T., Keane, P. A., Khalid, H., Pontikos, N., Sergouniotis, P. & Balaskas, K., 16 Apr 2019, Communications in Computer and Information Science (CCIS). 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  6. Published

    CHANGES IN BONE SHAPE ARE BOTH A RISK FACTOR FOR AND A RESULT OF HIP OSTEOARTHRITIS, A FOLLOW-UP STUDY IN THE CHECK COHORT

    Gielis, W., Rayegan, H., Lindner, C., Davison, A. K., Arbabi, V., Cootes, T. F., de Jong, P. A. & Weinans, H., Apr 2019, In : Osteoarthritis and Cartilage. 27, p. S320-S321

    Research output: Contribution to journalMeeting Abstract

  7. Published

    Fully automatic teeth segmentation in adult OPG images

    Blanco, N. V., Cootes, T. F., Lindner, C., Carmona, I. T. & Carreira, M. J., 1 Jan 2019, Computational Methods and Clinical Applications in Musculoskeletal Imaging - 6th International Workshop, MSKI 2018, Held in Conjunction with MICCAI 2018, Revised Selected Papers. Zheng, G., Vrtovec, T., Yao, J. & Pozo, J. M. (eds.). Springer Nature, p. 11-21 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11404 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  8. Accepted/In press

    Automated estimation of the mechanical Hip-Knee-Ankle angle using standard knee radiographs

    Gielis, W. P., Rayegan, H., Arbabi, V., Ahmadi Brooghani, S. Y., Lindner, C., Cootes, T., de Jong, P. A., Weinans, H. H. & Custers, R., 2019, (Accepted/In press).

    Research output: Contribution to conferencePoster

  9. Published

    Automated scoring of aortic calcification in vertebral fracture assessment images

    Chaplin, L. & Cootes, T., 2019, Medical Imaging 2019: Computer-Aided Diagnosis. Mori, K. & Hahn, H. K. (eds.). SPIE, 1095038. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10950).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  10. Published

    Automatic detection of wrist fractures from posteroanterior and lateral radiographs: A deep learning-based approach

    Ebsim, R., Naqvi, J. & Cootes, T. F., 2019, Computational Methods and Clinical Applications in Musculoskeletal Imaging - 6th International Workshop, MSKI 2018, Held in Conjunction with MICCAI 2018, Revised Selected Papers. Zheng, G., Vrtovec, T., Yao, J. & Pozo, J. M. (eds.). Springer Nature, p. 114-125 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11404 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  11. Published

    Error Estimation for Appearance Model Segmentation of Musculoskeletal Structures using Multiple, Independent Sub-models

    Bromiley, P., Kariki, E. & Cootes, T., 2019, Computational Methods and Clinical Applications for Spine Imaging: The Fifth MICCAI CSI Workshop & Challenge,.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  12. Published

    Landmark Localisation in Radiographs Using Weighted Heatmap Displacement Voting

    Medical Student Annotation Collaborative, 2019, Computational Methods and Clinical Applications in Musculoskeletal Imaging - 6th International Workshop, MSKI 2018, Held in Conjunction with MICCAI 2018, Revised Selected Papers. Zheng, G., Vrtovec, T., Yao, J. & Pozo, J. M. (eds.). Springer Nature, Vol. 11404 LNCS. p. 73-85 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11404 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  13. Published

    Measurement of synovial tissue volume in knee osteoarthritis using a semiautomated MRI-based quantitative approach.

    Perry, T., Gait, A., O'Neill, T., Parkes, M., Hodgson, R., Callaghan, M. J., Arden, N. K., Felson, D. & Cootes, T., 2019, In : Magn Reson Med. 81, 5, p. 3056-3064

    Research output: Contribution to journalArticle

  14. Published

    Perthes Disease Classification Using Shape and Appearance Modelling

    Davison, A., Cootes, T., Perry, D. C., Luo, W. & Lindner, C., 2019, 6th MICCAI Workshop on Computational Methods and Clinical Applications in Musculoskeletal Imaging. Springer Nature, Vol. 11404 LNCS. p. 86-98 (Lecture Notes in Computer Science; vol. 11404).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  15. 2018
  16. Published

    Classification of Osteoporotic Vertebral Fractures Using Shape and Appearance Modelling

    Bromiley, P., Kariki, E., Adams, J. & Cootes, T., 1 Jan 2018, Computational Methods and Clinical Applications in Musculoskeletal Imaging: 5th International Workshop, MSKI 2017, Held in Conjunction with MICCAI 2017, Quebec City, QC, Canada, September 10, 2017, Revised Selected Papers. Springer Nature

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  17. Published
  18. 2017
  19. Published

    Shape and Texture Modeling of Hip Bone Density for Fracture Discrimination.

    Shepherd, J. A., Mahmoudzadeh, A. P., Fan, B., Chaplin, L., Cootes, T., Cauley, J. A., Cawthon, P., Cummings, S., Liu, F., Lindner, C., Murphy, R., Visser, M. & Schwartz, A., Dec 2017, In : Journal of Bone and Mineral Research. 32, p. S178-S178

    Research output: Contribution to journalMeeting Abstract

  20. Published

    Adaptable landmark localisation: Applying model transfer learning to a shape model matching system

    Lindner, C., Waring, D., Thiruvenkatachari, B., O’Brien, K. & Cootes, T. F., Sep 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Springer Nature, Vol. 10433 LNCS. p. 144-151 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10433 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  21. Published
  22. Published

    Prediction of risk for radiographic hip osteoarthritis in subjects with early osteoarthritis of hip or knee

    Gielis, W. P., Weinans, H. H., van Spil, W. E., Agricola, R., Cootes, T. F., de Jong, P. A. & Lindner, C., Apr 2017, In : Osteoarthritis and Cartilage. 25, p. S12-S13

    Research output: Contribution to journalLetter

  23. Published

    Automatic Annotation of Radiographs using Random Forest Regression Voting for Building Statistical Models for Skeletal Maturity

    Adeshina, S. A., Lindner, C. & Cootes, T., Jan 2017, In : International Journal of Computer Techniques. 4, 1, p. 49-55

    Research output: Contribution to journalArticle

  24. Published

    Combination of Lateral and PA View Radiographs to Study Development of Knee OA and Associated Pain

    Minciullo, L., Thomson, J. & Cootes, T., 2017, Medical Imaging 2017: Computer-Aided Diagnosis. SPIE, Vol. 10134. (SPIE Proceedings).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  25. Published

    Fully Automated Shape Analysis for Detection of Osteoarthritis from Lateral Knee Radiographs

    Minciullo, L. & Cootes, T., 2017, International Conference on Patern Recognition.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  26. Published

    Fully Automatic Detection of Distal Radius Fractures from Posteroanterior and Lateral Radiographs

    Ebsim, R., Naqvi, J. & Cootes, T., 2017, Computer Assisted and Robotic Endoscopy and Clinical Image-Based Procedures - 4th International Workshop, CARE 2017 and 6th International Workshop, CLIP 2017 Held in Conjunction with MICCAI 2017, Proceedings. Springer Nature, Vol. 10550 LNCS. p. 91-98 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10550 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  27. Published

    Fully Automatic Localisation of Vertebrae in CT images using Random Forest Regression Voting

    Bromiley, P., Kariki, E., Adams, J. & Cootes, T., 2017, Computational Methods and Clinical Applications for Spine Imaging: 4th International Conference and Challenge, CSI 2016. Yao, J., Vrtovec, T., Zheng, G., Frangi, A., Glocker, B. & Li, S. (eds.). Springer Nature, Vol. LNCS 10182. p. 51-63 13 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  28. Published

    Indecisive trees for classification and prediction of knee osteoarthritis

    Minciullo, L., Bromiley, P. A., Felson, D. T. & Cootes, T. F., 2017, Machine Learning in Medical Imaging - 8th International Workshop, MLMI 2017, Held in Conjunction with MICCAI 2017, Proceedings. Springer Nature, Vol. 10541 LNCS. p. 283-290 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10541 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  29. Published

    Modeling the shape and composition of the human body using dual energy X-ray absorptiometry images

    Shepherd, J. A., Ng, B. K., Fan, B., Schwartz, A. V., Cawthon, P., Cummings, S. R., Kritchevsky, S., Nevitt, M., Santanasto, A. & Cootes, T. F., 2017, In : PLoS ONE. 12, 4, e0175857.

    Research output: Contribution to journalArticle

  30. 2016
  31. Published

    New software to automatically outline bones in OPG

    Sasikala, B., Krishnakumar Raja, V. B., Cootes, T. & Lindner, C., Nov 2016, p. 167.

    Research output: Contribution to conferencePaper

  32. Published

    Detecting osteophytes in radiographs of the knee to diagnose Osteoarthritis

    Thomson, J., O'Neill, T., Felson, D. & Cootes, T., 1 Oct 2016, Machine Learning in Medical Imaging: 7th International workshop, MLMI 2016 held in conjunction with MICCAI 2016, Athens, Greece, October 17, 2016, Proceedings. Wang, L., Adeli, E., Wang, Q., Shi, Y. & Suk, H-I. (eds.). Switzerland: Springer Nature, p. 45-52 8 p. (Lecture Notes in Computer Science (LNCS); vol. 10019).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  33. Published

    Fully Automatic System for Accurate Localisation and Analysis of Cephalometric Landmarks in Lateral Cephalograms

    Lindner, C., Wang, C-W., Huang, C-T., Li, C-H., Chang, S-W. & Cootes, T., 20 Sep 2016, In : Scientific Reports. 6, 33581.

    Research output: Contribution to journalArticle

  34. Published

    Synovial volume vs synovial measurements from dynamic contrast enhanced MRI as measures of response in osteoarthritis

    Gait, A., Hodgson, R., Parkes, M., Hutchinson, C., O'Neill, T., Maricar, N., Marjanovic, E., Cootes, T. & Felson, D., Aug 2016, In : Osteoarthritis and Cartilage. 24, 8, p. 1392-1398 7 p.

    Research output: Contribution to journalArticle

  35. Published

    A benchmark for comparison of dental radiography analysis algorithms

    Wang, C-W., Huang, C-T., Lee, J-H., Li, C-H., Chang, S-W., Siao, M-J., Lai, T-M., Ibragimov, B., Vrtovec, T., Ronneberger, O., Fischer, P., Cootes, T. F. & Lindner, C., 2016, In : Medical Image Analysis. 31, p. 63-76

    Research output: Contribution to journalArticle

  36. Published

    Automatic localisation of vertebrae in DXA images using random forest regression voting

    Bromiley, P. A., Adams, J. E. & Cootes, T. F., 2016, Computational Methods and Clinical Applications for Spine Imaging - 3rd International Workshop and Challenge, CSI 2015 Held in Conjunction with MICCAI 2015, Revised Selected Papers. Springer Nature, Vol. 9402. p. 38-51 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9402).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  37. Published

    Fully automated radiographic knee shape analysis of the OAI dataset: Is knee shape asymmetry an early indicator of unilateral knee OA?

    Lindner, C. & Cootes, T., 2016, Proceedings of the 9th International Workshop on Osteoarthritis Imaging (IWOAI 2016). www.iwoai.org, p. 57

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  38. Published

    Multi-point Regression Voting for Shape Model Matching

    Bromiley, P., Lindner, C., Thomson, J., Wrigley, M. & Cootes, T., 2016, In : Procedia Computer Science. 90, p. 48-53 6 p.

    Research output: Contribution to journalArticle

  39. Published

    Synovial tissue volume: a treatment target in knee osteoarthritis (OA)

    O'Neill, TW., Parkes, MJ., Maricar, N., Marjanovic, E., Hodgson, R., Gait, A. D., Cootes, T. F., Hutchinson, C. E. & Felson, DT., 2016, In : Annals of the rheumatic diseases. 75, 1, p. 84-90 6 p.

    Research output: Contribution to journalArticle

  40. 2015
  41. Published

    Multi-View Constrained Local Models for Large Head Angle Facial Tracking

    Rajamanoharan, G. & Cootes, T. F., Dec 2015, Proceedings of IEEE International Conference on Computer Vision (ICCV-W15), Workshop on 300 Videos in the Wild (300-VW): Facial Landmark Tracking in-the-Wild Challenge and Workshop. Proceedings of IEEE International Conference on Computer Vision (ICCV-W15), Workshop on 300 Videos in the Wild (300-VW): Facial Landmark Tracking in-the-Wild Challenge and Workshop

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  42. Published

    Automated shape and texture analysis for detection of Osteoarthritis from radiographs of the knee

    Thompson, J., O’Neill, T., Felson, D. & Cootes, T. F., Oct 2015, Proc. MICCAI 2015 Part 2. Springer Nature, p. 127-135 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  43. Published

    Investigation of association between hip osteoarthritis susceptibility loci and radiographic proximal femur shape

    Lindner, C., Thiagarajah, S., Wilkinson, J. M., Panoutsopoulou, K., Day-Williams, A. G., The ArcOGEN Consortium, Cootes, T. F., Wallis, G. A. & Ollier, W., 28 Jul 2015, In : Arthritis & Rheumatology (Hoboken) . 67, 8, p. 2076-2084 9 p.

    Research output: Contribution to journalArticle

  44. Published

    Fully Automatic Cephalometric Evaluation using Random Forest Regression-Voting

    Lindner, C. & Cootes, T. F., 2015, host publication.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  45. Published

    Learning-Based Shape Model Matching: Training Accurate Models with Minimal Manual Input

    Lindner, C., Thomson, J., The ArcOGEN Consortium, Cootes, TF., Navab, N. (ed.), Hornegger, J. (ed.), Wells, WM. (ed.) & Frangi, AF. (ed.), 2015, The 18th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2015, Part III). Navab, N., Hornegger, J., Wells, WM. & Frangi, AF. (eds.). Springer Nature, Vol. 9351. p. 580-587 8 p. (Lecture Notes in Computer Science).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  46. Published

    Robust and Accurate Shape Model Matching Using Random Forest Regression-Voting

    Lindner, C., Bromiley, P. A., Ionita, M. C. & Cootes, T. F., 2015, In : IEEE Transactions on Pattern Analysis and Machine Intelligence. 37, 9, p. 1862-1874 13 p.

    Research output: Contribution to journalArticle

  47. 2014
  48. Published

    Localization of Vertebrae on DXA VFA Images using Constrained Local Models with Random Forest Regression Voting

    Bromiley, P. A., Adams, J. & Cootes, T. F., 17 Oct 2014, Journal of Orthopaedic Translation Volume 2 Issue 4. p. 227-228 2 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  49. Published

    Localisation of Vertebrae on DXA Images using Constrained Local Models with Random Forest Regression Voting

    Bromiley, P., Cootes, T., Yao, J. (ed.), Glocker, B. (ed.), Klinder, T. (ed.) & Li, S. (ed.), 14 Sep 2014, Recent Advances in Computational Methods and Clinical Applications for Spine Imaging. Yao, J., Glocker, B., Klinder, T. & Li, S. (eds.). Switzerland: Springer Nature, Vol. 20. p. 159-171 13 p. (Lecture Notes in Computational Vision and Biomechanics).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  50. Published

    Ensemble registration: Combining groupwise registration and segmentation

    Purwani, S., Twining, C., Cootes, T., Reyes-Aldasoro, C. C. (ed.) & Slabaugh, G. (ed.), Jul 2014, Proceedings of the 18th Conference on Medical Image Understanding and Analysis. Reyes-Aldasoro, C. C. & Slabaugh, G. (eds.). BMVA Press, p. 105-110 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  51. Published
  52. Published

    Indexed distribution analysis for improved significance testing of spatially heterogeneous parameter maps: Application to dynamic contrast-enhanced MRI biomarkers

    Waterton, J., Rose, C. J., O'Connor, J. P. B., Cootes, T. F., Taylor, C. J., Jayson, G. C., Parker, G. J. M. & Waterton, J. C., Mar 2014, In : Magnetic Resonance in Medicine. 71, 3, p. 1299-1311 13 p.

    Research output: Contribution to journalArticle

  53. Published

    Automatic Extraction of Hand-Bone Shapes using Random Forest Regression-Voting in the Constrained Local Model Framework (Extended Abstract)

    Lindner, C. & Cootes, TF., 2014, Proceedings of SHAPE 2014. Vol. 1. p. 17-17 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  54. Published

    Automatic segmentation of carpal area bones with random forest regression voting for estimating skeletal maturity in infants

    Adeshina, S. A., Lindner, C. & Cootes, T. F., 2014, host publication. IEEE

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  55. 2013
  56. Published

    Using Detailed Independent 3D sub-models to improve facial feature localisation and pose estimation.

    Caunce, A., Taylor, C. & Cootes, T., 18 Dec 2013, In : International Journal on Artificial Intelligence Tools. 18 p.

    Research output: Contribution to journalArticle

  57. Published

    A parts-and-geometry initialiser for 3D non-rigid registration using features derived from spin images

    Babalola, K., Gait, A. & Cootes, T. F., 23 Nov 2013, In : Neurocomputing. 120, p. 113-120 7 p.

    Research output: Contribution to journalArticle

  58. Published

    Development of a fully automatic shape model matching (FASMM) system to derive statistical shape models from radiographs: Application to the accurate capture and global representation of proximal femur shape

    Lindner, C., Thiagarajah, S., Wilkinson, J. M., The ArcOGEN Consortium, Wallis, G. A. & Cootes, T., Oct 2013, In : Osteoarthritis and Cartilage. 21, 10, p. 1537-1544 7 p.

    Research output: Contribution to journalArticle

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