Prof Terri AttwoodBSc, PhD

Emeritus Professor

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Publications

  1. 2017
  2. Published

    The ELIXIR-EXCELERATE Train-the-Trainer pilot programme: Empower researchers to deliver high-quality training

    Morgan, S. L., Palagi, P. M., Fernandes, P. L., Koperlainen, E., Dimec, J., Marek, D., Larcombe, L., Rustici, G., Attwood, T. K. & Via, A., 24 Aug 2017, In : F1000Research. 6, 1557.

    Research output: Contribution to journalArticle

  3. Published

    ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR

    Rustici, G., Larcombe-McDouall, J. B., Hendricusdottir, R., Attwood, T. K., Bacall, F., Beard, N., Bellis, L. J., Dunn, W. B., Hancock, J. M., Nenadic, A., Orengo, C., Overduin, B., Sansone, S. A., Thurston, M., Viant, M. R., Winder, C. L., Goble, C. A. & Ponting, C. P., 21 Jul 2017, In : F1000Research. 6, 952.

    Research output: Contribution to journalArticle

  4. Published

    A global perspective on bioinformatics training needs

    Attwood, T., 17 Feb 2017, 19 p. bioRxiv.

    Research output: Other contribution

  5. Published

    InterPro in 2017-beyond protein family and domain annotations

    Finn, R. D., Attwood, T. K., Babbitt, P. C., Bateman, A., Bork, P., Bridge, A. J., Chang, H-Y., Dosztányi, Z., El-Gebali, S., Fraser, M., Gough, J., Haft, D., Holliday, G. L., Huang, H., Huang, X., Letunic, I., Lopez, R., Lu, S., Marchler-Bauer, A., Mi, H. & 27 othersMistry, J., Natale, D. A., Necci, M., Nuka, G., Orengo, C. A., Park, Y., Pesseat, S., Piovesan, D., Potter, S. C., Rawlings, N. D., Redaschi, N., Richardson, L., Rivoire, C., Sangrador-Vegas, A., Sigrist, C., Sillitoe, I., Smithers, B., Squizzato, S., Sutton, G., Thanki, N., Thomas, P. D., Tosatto, S. C. E., Wu, C. H., Xenarios, I., Yeh, L-S., Young, S-Y. & Mitchell, A. L., 4 Jan 2017, In : Nucleic acids research. 45, D1, p. D190-D199

    Research output: Contribution to journalArticle

  6. Published

    A global perspective on evolving bioinformatics and data science training needs

    Attwood, T., Blackford, S., Brazas, M. D., Davies, A. & Schneider, M. V., 2017, In : Briefings in Bioinformatics.

    Research output: Contribution to journalArticle

  7. Published
  8. Published

    BioCIDER: a Contextualisation InDEx for bio-logical Resources discovery

    Horro, C., Cook, M., Attwood, T., Brazas, M. D., Hancock, J. M., Palagi, P., Corpas, M. & Jimenez, R., 2017, In : Bioinformatics.

    Research output: Contribution to journalArticle

  9. Published

    Plug gap in essential bioinformatics skills

    Brazas, M. D., Blackford, S. & Attwood, T., 2017, In : Nature. 544

    Research output: Contribution to journalLetter

  10. 2016
  11. Published

    Defining a lingua franca for the ELIXIR/GOBLET e-learning ecosystem

    Attwood, T., 13 Nov 2016, 22 p. Zenodo.

    Research output: Other contribution

  12. Published

    Bioinformatics challenges at the interface of biology and computer science: Mind the gap

    Attwood, TK., Pettifer, S. R. & Thorne, D., 2016, John Wiley & Sons Ltd.

    Research output: Book/ReportBook

  13. 2015
  14. Published

    An open science peer review oath.

    Aleksic, J., Alexa, A., Attwood, TK., Chue, H. N., Dahlö, M., Davey, R., Dinkel, H., Förstner, KU., Grigorov, I., Hériché, JK., Lahti, L., MacLean, D., Markie, ML., Molloy, J., Schneider, MV., Scott, C., Smith-Unna, R. & Vieira, BM., 2015, In : F1000Research. 3, p. 271

    Research output: Contribution to journalArticle

  15. Published

    GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training

    Attwood, TK., Bongcam-Rudloff, E., Brazas, ME., Corpas, M., Gaudet, P., Lewitter, F., Mulder, N., Palagi, PM., Schneider, MV., van, G. CW. & GOBLET Consortium, 2015, In : P L o S Computational Biology (Online). 11, 4, e1004143.

    Research output: Contribution to journalArticle

  16. Published

    Longevity of biological databases

    Attwood, TK., Agit, B. & Ellis, LBM., 2015, In : EMBnet.journal. 21

    Research output: Contribution to journalArticle

  17. Published

    The InterPro protein families database: the classification resource after 15 years.

    Mitchell, A., Chang, HY., Daugherty, L., Fraser, M., Hunter, S., Lopez, R., McAnulla, C., McMenamin, C., Nuka, G., Pesseat, S., Sangrador-Vegas, A., Scheremetjew, M., Rato, C., Yong, SY., Bateman, A., Punta, M., Attwood, TK., Sigrist, CJ., Redaschi, N., Rivoire, C. & 16 othersXenarios, I., Kahn, D., Guyot, D., Bork, P., Letunic, I., Gough, J., Oates, M., Haft, D., Huang, H., Natale, DA., Wu, CH., Orengo, C., Sillitoe, I., Mi, H., Thomas, PD. & Finn, RD., 2015, In : Nucleic acids research. 43, p. D213-D221

    Research output: Contribution to journalArticle

  18. 2014
  19. Published

    The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

    Corpas, M., Jimenez, RC., Bongcam-Rudloff, E., Budd, A., Brazas, MD., Fernandes, PL., Gaeta, B., van, G. C., Korpelainen, E., Lewitter, F., McGrath, A., MacLean, D., Palagi, PM., Rother, K., Taylor, J., Via, A., Watson, M., Schneider, MV. & Attwood, TK., 4 Sep 2014, In : Bioinformatics. 31, 1, pii: btu601.

    Research output: Contribution to journalArticle

  20. Published

    Completing the structural family portrait of the human EphB tyrosine kinase domains

    Overman, R. C., Debreczeni, J. E., Truman, C. M., McAlister, M. S. & Attwood, T. K., 2014, In : Protein science. 23, 5, p. 627-638 11 p.

    Research output: Contribution to journalArticle

  21. Published

    Concise Encyclopaedia of Bioinformatics & Computational Biology, 2nd Edition

    Attwood, T., Hancock, JM. (ed.) & Zvelebil, MJ. (ed.), 2014, Concise Encyclopaedia of Bioinformatics & Computational Biology: 2nd Edition. John Wiley & Sons Ltd

    Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary

  22. Published

    GOBLET: achievements and goals a year on

    Attwood, T., Blackford, S., Brazas, MD., Brooksbank, C., Budd, A., Corpas, M., Davies, A., Fatumo, S., Fernandes, PL., Gaudet, P., Hayer, J., Jimenez, R., Korpelainen, E., Kumuthini, J., Maclean, D., McGrath, A., Orengo, C., Palagi, PM., Ponting, C., Sansone, S. & 6 othersSchneider, MV., Schonbach, C., Taylor, J., van, G. CWG., Vriend, G. & GOBLET Consortium, 2014, In : EMBnet.journal. 20

    Research output: Contribution to journalArticle

  23. 2013
  24. Published

    IAnn: An event sharing platform for the life sciences

    Jimenez, R. C., Albar, J. P., Bhak, J., Blatter, M. C., Blicher, T., Brazas, M. D., Brooksbank, C., Budd, A., De Las Rivas, J., Dreyer, J., Van Driel, M. A., Dunn, M. J., Fernandes, P. L., Van Gelder, C. W. G., Hermjakob, H., Ioannidis, V., Judge, D. P., Kahlem, P., Korpelainen, E., Kraus, H. J. & 15 othersLoveland, J., Mayer, C., McDowall, J., Moran, F., Mulder, N., Nyronen, T., Rother, K., Salazar, G. A., Schneider, R., Via, A., Villaveces, J. M., Yu, P., Schneider, M. V., Attwood, T. K. & Corpas, M., 1 Aug 2013, In : Bioinformatics. 29, 15, p. 1919-1921 2 p.

    Research output: Contribution to journalArticle

  25. Published

    Best practices in bioinformatics training for life scientists

    Via, A., Blicher, T., Bongcam-Rudloff, E., Brazas, M. D., Brooksbank, C., Budd, A., De Las Rivas, J., Dreyer, J., Fernandes, P. L., Van Gelder, C., Jacob, J., Jimenez, R. C., Loveland, J., Moran, F., Mulder, N., Nyrönen, T., Rother, K., Schneider, M. V. & Attwood, T. K., 2013, In : Briefings in Bioinformatics. 14, 5, p. 528-537 9 p., bbt043.

    Research output: Contribution to journalArticle

  26. Published

    Biochemical and biophysical characterisation of four EphB kinase domains reveals contrasting thermodynamic, kinetic and inhibition profiles

    Overman, R., Debreczeni, J., Truman, C., McAlister, M. & Attwood, TK., 2013, In : Biosci. Rep.. 33, 3

    Research output: Contribution to journalArticle

  27. Published

    Stability and solubility engineering of the EphB4 receptor tyrosine kinase catalytic domain.

    Overman, R., Green, I., Truman, C., Read, J., Embrey, K., McAlister, M. & Attwood, TK., 2013, In : Protein Eng. Des. Sel..

    Research output: Contribution to journalArticle

  28. 2012
  29. Published

    Reuniting data and narrative in scientific articles

    Pettifer, S., Velterop, J., Attwood, T. K., Harland, L., Marsh, J., Thorne, D. & Tunbridge, A., Nov 2012, In : Insights: the UKSG Journal (Online) . 25, 3, p. 288-293 5 p.

    Research output: Contribution to journalArticle

  30. Published

    Utopia Documents: Transforming how industrial scientists interact with the scientific literature

    Pettifer, S., Attwood, T., Marsh, J. & Thorne, D., Oct 2012, Open Source Software in Life Science Research: Practical Solutions to Common Challenges in the Pharmaceutical Industry and Beyond|Open Source Softw. in Life Sci. Res.: Pract. Solut. to Common Chall. in the Pharma. Ind. and Beyond: Practical solutions to common challenges in the pharmaceutical industry and beyond. Woodhead Publishing Series in Biomedicine, No.16: Elsevier BV, p. 351-365 14 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  31. Published

    Implementation of proteomic biomarkers: Making it work

    Mischak, H., Ioannidis, J. P. A., Argiles, A., Attwood, T. K., Bongcam-Rudloff, E., Broenstrup, M., Charonis, A., Chrousos, G. P., Delles, C., Dominiczak, A., Dylag, T., Ehrich, J., Egido, J., Findeisen, P., Jankowski, J., Johnson, R. W., Julien, B. A., Lankisch, T., Leung, H. Y., Maahs, D. & 17 othersMagni, F., Manns, M. P., Manolis, E., Mayer, G., Navis, G., Novak, J., Ortiz, A., Persson, F., Peter, K., Riese, H. H., Rossing, P., Sattar, N., Spasovski, G., Thongboonkerd, V., Vanholder, R., Schanstra, J. P. & Vlahou, A., Sep 2012, In : European Journal of Clinical Investigation. 42, 9, p. 1027-1036 9 p.

    Research output: Contribution to journalArticle

  32. Published

    Bioinformatics training network (BTN): A community resource for bioinformatics trainers: A community resource for bioinformatics trainers

    Schneider, M. V., Walter, P., Blatter, M. C., Watson, J., Brazas, M. D., Rother, K., Budd, A., Via, A., van Gelder, C. W. G., Jacob, J., Fernandes, P., Nyrönen, T. H., De Las Rivas, J., Blicher, T., Jimenez, R. C., Loveland, J., McDowall, J., Jones, P., Vaughan, B. W., Lopez, R. & 2 othersAttwood, T. K. & Brooksbank, C., May 2012, In : Briefings in Bioinformatics. 13, 3, p. 383-389 6 p., bbr064.

    Research output: Contribution to journalArticle

  33. Published

    InterPro in 2011: New developments in the family and domain prediction database

    Hunter, S., Jones, P., Mitchell, A., Apweiler, R., Attwood, T. K., Bateman, A., Bernard, T., Binns, D., Bork, P., Burge, S., De Castro, E., Coggill, P., Corbett, M., Das, U., Daugherty, L., Duquenne, L., Finn, R. D., Fraser, M., Gough, J., Haft, D. & 30 othersHulo, N., Kahn, D., Kelly, E., Letunic, I., Lonsdale, D., Lopez, R., Madera, M., Maslen, J., McAnulla, C., McDowall, J., McMenamin, C., Mi, H., Mutowo-Muellenet, P., Mulder, N., Natale, D., Orengo, C., Pesseat, S., Punta, M., Quinn, A. F., Rivoire, C., Sangrador-Vegas, A., Selengut, J. D., Sigrist, C. J. A., Scheremetjew, M., Tate, J., Thimmajanarthanan, M., Thomas, P. D., Wu, C. H., Yeats, C. & Yong, S. Y., Jan 2012, In : Nucleic acids research.. 40, 1, p. D306-D312

    Research output: Contribution to journalArticle

  34. Published

    NucleaRDB: Information system for nuclear receptors

    Vroling, B., Thorne, D., McDermott, P., Joosten, H. J., Attwood, T. K., Pettifer, S. & Vriend, G., Jan 2012, In : Nucleic acids research.. 40, 1, p. D377-D380

    Research output: Contribution to journalArticle

  35. Published

    Biocurators and biocuration: Surveying the 21st century challenges

    Burge, S., Attwood, T. K., Bateman, A., Berardini, T. Z., Cherry, M., O'Donovan, C., Xenarios, L. & Gaudet, P., 2012, In : Database. 2012, bar059.

    Research output: Contribution to journalArticle

  36. Published

    The PRINTS database: A fine-grained protein sequence annotation and analysis resource-its status in 2012

    Attwood, T. K., Coletta, A., Muirhead, G., Pavlopoulou, A., Philippou, P. B., Popov, I., Romá-Mateo, C., Theodosiou, A. & Mitchell, A. L., 2012, In : Database. 2012, bas019.

    Research output: Contribution to journalArticle

  37. 2011
  38. Published

    Concepts, historical milestones and the central place of bioinformatics in modern biology: a European perspective.

    Attwood, T. K., Gisel, A., Eriksson, N-E. & Bongcam-Rudloff, E., Nov 2011, Bioinformatics : Trends and Methodologies. Rijecka, Croatia: Intech Online Publishers, p. 3-38 36 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  39. Published

    Ten Simple Rules for Developing a Short Bioinformatics Training Course

    Via, A., de Las Rivas, J., Attwood, T. K., Landsman, D., Brazas, M. D., Leunissen, J. A. M., Tramontano, A. & Schneider, M. V., 27 Oct 2011, In : 
PLoS Computational Biology. 7, 10, e1002245.

    Research output: Contribution to journalArticle

  40. Published

    Integrating GPCR-specific information with full text articles

    Vroling, B., Thorne, D., McDermott, P., Attwood, T. K., Vriend, G. & Pettifer, S., 12 Sep 2011, In : BMC Bioinformatics. 12, 362.

    Research output: Contribution to journalArticle

  41. Published

    Ceci n'est pas un hamburger: Modelling and representing the scholarly article

    Pettifer, S., Mcdermott, P., Marsh, J., Thorne, D., Villeger, A. & Attwood, T. K., Jul 2011, In : Learned Publishing. 24, 3, p. 207-220 13 p.

    Research output: Contribution to journalArticle

  42. Published

    Towards Interoperability of European Language Resources

    Ananiadou, S., Thompson, P., Kano, Y., McNaught, J., Attwood, T., Day, P. J. R., Keane, J., Jackson, D. & Pettifer, S., Jul 2011, In : Ariadne. 67

    Research output: Contribution to journalArticle

  43. Published

    Towards BioDBcore: A community-defined information specification for biological databases

    Gaudet, P., Bairoch, A., Field, D., Sansone, S. A., Taylor, C., Attwood, T. K., Bateman, A., Blake, J. A., Bult, C. J., Cherry, J. M., Chisholm, R. L., Cochrane, G., Cook, C. E., Eppig, J. T., Galperin, M. Y., Gentleman, R., Goble, C. A., Gojobori, T., Hancock, J. M., Howe, D. G. & 18 othersImanishi, T., Kelso, J., Landsman, D., Lewis, S. E., Karsch-Mizrachi, I., Orchard, S., Ouellette, B. F. F., Ranganathan, S., Richardson, L., Rocca-Serra, P., Schofield, P. N., Smedley, D., Southan, C., Tan, T. W., Tatusova, T., Whetzel, P. L., White, O. & Yamasaki, C., Jan 2011, In : Nucleic acids research.. 39, 1, p. -D10

    Research output: Contribution to journalArticle

  44. Published

    Concepts, historical milestones and the central place of bioinformatics in modern biology: A european perspective

    Attwood, TK., Gisel, A., Eriksson, NE., Bongcam-Rudloff, E. & Mahdavi, M. A. (ed.), 2011, Bioinformatics - Trends and Methodologies. ntech Online Publishers

    Research output: Chapter in Book/Report/Conference proceedingChapter

  45. Published

    MINOTAUR – a Web-based annotator assistant tool. I

    Mitchell, A. L., Selimas, I. & Attwood, T. K., 2011, In : Journal of Systems Biology & Biomedical Technologies.

    Research output: Contribution to journalArticle

  46. Published

    Promoting Interoperability of Resources in META-SHARE

    Thompson, P., Kano, Y., McNaught, J., Pettifer, S., Attwood, T., Keane, J. & Ananiadou, S., 2011, IJCNLP 2011 Proceedings of the Workshop on Language Resources,Technology and Services in the Sharing Paradigm. N, C., T, I., S, P. & V, S. (eds.). Asian Federation of Natural Language Processing, p. 50-58 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  47. 2010
  48. Published

    Bioinformatics training: A review of challenges, actions and support requirements

    Schneider, M. V., Watson, J., Attwood, T., Rother, K., Budd, A., McDowall, J., Via, A., Fernandes, P., Nyronen, T., Blicher, T., Jones, P., Blatter, M. C., de Las Rivas, J., Judge, D. P., van der Gool, W. & Brooksbank, C., Nov 2010, In : Briefings in Bioinformatics. 11, 6, p. 544-551 7 p., bbq021.

    Research output: Contribution to journalArticle

  49. Published

    Utopia documents: Linking scholarly literature with research data

    Attwood, T. K., Kell, D. B., McDermott, P., Marsh, J., Pettifer, S. R. & Thorne, D., 4 Sep 2010, In : Bioinformatics. 26, 18, p. 568-574 6 p., btq383.

    Research output: Contribution to journalArticle

  50. Published

    Recommendations for biomarker identification and qualification in clinical proteomics

    Mischak, H., Allmaier, G., Apweiler, R., Attwood, T., Baumann, M., Benigni, A., Bennett, S. E., Bischoff, R., Bongcam-Rudloff, E., Capasso, G., Coon, J. J., D'Haese, P., Dominiczak, A. F., Dakna, M., Dihazi, H., Ehrich, J. H., Fernandez-Llama, P., Fliser, D., Frokiaer, J., Garin, J. & 29 othersGirolami, M., Hancock, W. S., Haubitz, M., Hochstrasser, D., Holman, R. R., Ioannidis, J. P. A., Jankowski, J., Julian, B. A., Klein, J. B., Kolch, W., Luider, T., Massy, Z., Mattes, W. B., Molina, F., Monsarrat, B., Novak, J., Peter, K., Rossing, P., Sánchez-Carbayo, M., Schanstra, J. P., Semmes, O. J., Spasovski, G., Theodorescu, D., Thongboonkerd, V., Vanholder, R., Veenstra, T. D., Weissinger, E., Yamamoto, T. & Vlahou, A., 25 Aug 2010, In : Science Translational Medicine. 2, 46, 46ps42.

    Research output: Contribution to journalArticle

  51. Published

    WIWS: A protein structure bioinformatics web service collection

    Hekkelman, M. L., te Beek, T. A. H., Pettifer, S. R., Thorne, D., Attwood, T. K. & Vriend, G., 25 May 2010, In : Nucleic acids research.. 38, 2, p. W719-W723 gkq453.

    Research output: Contribution to journalArticle

  52. Published

    The EMBRACE web service collection

    Pettifer, S., Ison, J., Kalaš, M., Thorne, D., McDermott, P., Jonassen, I., Liaquat, A., Fernández, J. M., Rodriguez, J. M., Pisano, D. G., Blanchet, C., Uludag, M., Rice, P., Bartaseviciute, E., Rapacki, K., Hekkelman, M., Sand, O., Stockinger, H., Clegg, A. B., Bongcam-Rudloff, E. & 5 othersSalzemann, J., Breton, V., Attwood, T. K., Cameron, G. & Vriend, G., 12 May 2010, In : Nucleic acids research.. 38, 2, p. W683-W688 gkq297.

    Research output: Contribution to journalArticle

  53. Published

    Low-complexity regions within protein sequences have position-dependent roles

    Coletta, A., Pinney, J. W., Solís, D. Y. W., Marsh, J., Pettifer, S. R. & Attwood, T. K., 23 Apr 2010, In : BMC Systems Biology. 4, 43.

    Research output: Contribution to journalArticle

  54. 2009
  55. Published

    An active registry for bioinformatics web services

    Pettifer, S., Thorne, D., Mcdermott, P., Attwood, T., Baran, J., Bryne, J. C., Hupponen, T., Mowbray, D. & Vriend, G., Aug 2009, In : Bioinformatics. 25, 16, p. 2090-2091 1 p.

    Research output: Contribution to journalArticle

  56. Published

    Visualising biological data: A semantic approach to tool and database integration

    Pettifer, S., Thorne, D., McDermott, P., Marsh, J., Villéger, A., Kell, D. B. & Attwood, T. K., 16 Jun 2009, In : BMC Bioinformatics. 10, 6, S19.

    Research output: Contribution to journalArticle

  57. Published

    2nd combined working group and management committee meeting of urine and kidney proteomics COST action 29-30 March 2009, Nafplio, Greece

    Vlahou, A., Allmaier, G., Bongcam-Rudloff, E., Charonis, A., Mischak, H., Spasovski, G., Aasberg, A., Allory, Y., Arthur, J., Attwood, T., Banks, R., Baumann, M., Benigni, A., Bezerianos, A., Campistol, J. M., Candiano, G., Capasso, G., Carpentier, S., Dadlez, M., Deltas, C. & 78 othersDijilianov, D., De Zeeuw, D., Decramer, S., Dihazi, H., Domon, B., Endlich, N., d'Alche-Buc, F., D'Haese, P., Edelman, A., Egido, J., El Nahas, M., Farinazzo, A., Fernandez-Llama, P., Feldt-Rasmussen, B., Frokiaer, J., Gansevoort, R., Garbis, S., Garin, J., Ghiggeri, G. M., Gimenez, I., Granier, C., Goumenos, D., Haylor, J. L., Hilario, M., Holthofer, H., Kalousis, A., Kaski, S., Knepper, M., Korneti, P., Kossida, S., Langham, R., Loftheim, H., Lopez-Novoa, J., Luider, T., Magni, F., Malats, N., Martin, J. L., Mayrhofer, C., Monsarrat, B., Mueller, G., Nielsen, S., Norling, M., O'Connell, S., Ortiz, A., Perunicic-Pekovic, G., Planelles, G., Polenakovic, M., Promponas, V., Rasic-Milutinovic, Z., Rehulka, P., Peter, K., Righetti, P. G., Ronco, P., Ryan, M., Sánchez-Carbayo, M., Schanstra, J., Semmes, J., Sheehan, D., Stenman, U. H., Stodkilde-Jorgensen, L., Tasic, V., Theodorescu, D., Thongboonkerd, V., Toncheva, D., Tsillibari, E., Tsiotis, G., Unwin, R., Vanholder, R., Vassilev, D., Vickers, M. E., Verhulst, A., Vilasi, A., Vlahakos, D., Vonk, R., Wright, P. C., Yamamoto, T., Yutaka, Y. & Zielenkiewicz, P., 2009, In : Proteomics - Clinical Applications. 3, 9, p. 1017-1022 5 p.

    Research output: Contribution to journalLetter

  58. Published

    Aspergillus genomes and the aspergillus cloud

    Mabey Gilsenan, J. E., Atherton, G., Bartholomew, J., Giles, P. F., Attwood, T. K., Denning, D. W. & Bowyer, P., 2009, In : Nucleic acids research.. 37, 1, p. D509-D514

    Research output: Contribution to journalArticle

  59. Published

    EMBER - A European Multimedia Bioinformatics Educational Resource

    Attwood, T. K., Selimas, I., Buis, R., Altenburg, R., Herzog, R., Ledent, V., Ghita, V., Fernandes, P., Marques, I., Brugman, M. & Maw, S. (ed.), 2009, Bioscience Education: Collected Papers. p. 167-178

    Research output: Chapter in Book/Report/Conference proceedingChapter

  60. Published

    InterPro: The integrative protein signature database

    Hunter, S., Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Binns, D., Bork, P., Das, U., Daugherty, L., Duquenne, L., Finn, R. D., Gough, J., Haft, D., Hulo, N., Kahn, D., Kelly, E., Laugraud, A., Letunic, I., Lonsdale, D., Lopez, R. & 18 othersMadera, M., Maslen, J., Mcanulla, C., McDowall, J., Mistry, J., Mitchell, A., Mulder, N., Natale, D., Orengo, C., Quinn, A. F., Selengut, J. D., Sigrist, C. J. A., Thimma, M., Thomas, P. D., Valentin, F., Wilson, D., Wu, C. H. & Yeats, C., 2009, In : Nucleic acids research.. 37, 1, p. D211-D215

    Research output: Contribution to journalArticle

  61. Published

    UMBER - University of Manchester Bioinformatics Education & Research

    Attwood, T. K., 2009, In : EMBnet.journal. 15, 4, p. 41-42

    Research output: Contribution to journalComment/debate

  62. Published

    Utopia Documents and The Semantic Biochemical Journal experiment

    Attwood, T. K., Kell, D. B., McDermott, P., Marsh, J., Pettifer, S. R. & Thorne, D., 2009, In : EMBnet.journal. 15, 4, p. 3-6

    Research output: Contribution to journalArticle

  63. 2008
  64. Published

    LRRCE: A leucine-rich repeat cysteine capping motif unique to the chordate lineage

    Park, H., Huxley-Jones, J., Boot-Handford, R. P., Bishop, P. N., Attwood, T. K. & Bella, J., 12 Dec 2008, In : BMC Genomics. 9, 599.

    Research output: Contribution to journalArticle

  65. Published

    Establishment of a European Network for Urine and Kidney Proteomics

    Vlahou, A., Schanstra, J., Frokiaer, J., El Nahas, M., Spasovski, G., Mischak, H., Domon, B., Allmaier, G., Bongcam-Rudloff, E. & Attwood, T., 7 Oct 2008, In : Journal of Proteomics. 71, 4, p. 490-492 2 p.

    Research output: Contribution to journalArticle

  66. Published

    Bioinformatyka i ewolucja molekularna (Bioinformatics and Molecular Evolution)

    Attwood, T. K. & Higgs, P., 2008, John Wiley & Sons Ltd.

    Research output: Book/ReportBook

  67. Published

    Experience using web services for biological sequence analysis

    Stockinger, H., Attwood, T., Chohan, S. N., Côté, R., Cudré-Mauroux, P., Falquet, L., Fernandes, P., Finn, R. D., Hupponen, T., Korpelainen, E., Labarga, A., Laugraud, A., Lima, T., Pafilis, E., Pagni, M., Pettifer, S., Phan, I. & Rahman, N., 2008, In : Briefings in Bioinformatics. 9, 6, p. 493-505 12 p.

    Research output: Contribution to journalArticle

  68. Published

    The EMBRACE registry.

    Pettifer, S., Thorne, D., McDermott, P., Attwood, T., Baran, J., Bryne, J. C., Hupponen, T. & Vriend, G., 2008, In : EMBnet.news. 14, 4, p. 58-62 4 p.

    Research output: Contribution to journalArticle

  69. 2007
  70. Published

    A Novel Phosphatase Family, Structurally Related to Dual-specificity Phosphatases, that Displays Unique Amino Acid Sequence and Substrate Specificity

    Romá-Mateo, C., Ríos, P., Tabernero, L., Attwood, T. K. & Pulido, R., 7 Dec 2007, In : Journal of molecular biology. 374, 4, p. 899-909 10 p.

    Research output: Contribution to journalArticle

  71. Published

    Functional assignment of MAPK phosphatase domains

    Nordle, A. K. L., Rios, P., Gaulton, A., Pulido, R., Attwood, T. K. & Tabernero, L., Oct 2007, In : Proteins: Structure, Function and Bioinformatics. 69, 1, p. 19-31 12 p.

    Research output: Contribution to journalArticle

  72. Published

    A "game" introduction to bioinformatic sequence comparisons

    Attwood, T., Barber, R. D. & Maiers, J., Aug 2007, Pearson Education, South Asia. 4 p. (Cell & Molecular Biology in Action)

    Research output: Book/ReportBook

  73. Published

    Learning to extract relations for protein annotation

    Kim, J. H., Mitchell, A., Attwood, T. K. & Hilario, M., 1 Jul 2007, In : Bioinformatics. 23, 13, p. 256-263 7 p.

    Research output: Contribution to journalArticle

  74. Published

    EMBER - A European Bioinformatics E-learning Resource

    Moulton, G., Selimas, I. & Attwood, T. K., 11 Jun 2007, Joint Meeting of Red Iberoamericana de Bioinformatica and EMBnet.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  75. Published

    Progress with UTOPIA

    Pettifer, S. & Attwood, T., 11 Jun 2007, Joint Meeting of Red Iberoamericana de Bioinformatica and EMBnet.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  76. Published

    New developments in the InterPro database

    Mulder, N. J., Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Binns, D., Bork, P., Buillard, V., Cerutti, L., Copley, R., Courcelle, E., Das, U., Daugherty, L., Dibley, M., Finn, R., Fleischmann, W., Gough, J., Haft, D., Hulo, N., Hunter, S. & 25 othersKahn, D., Kanapin, A., Kejariwal, A., Labarga, A., Langendijk-Genevaux, P. S., Lonsdale, D., Lopez, R., Letunic, I., Madera, M., Maslen, J., McAnulla, C., McDowall, J., Mistry, J., Mitchell, A., Nikolskaya, A. N., Orchard, S., Orengo, C., Petryszak, R., Selengut, J. D., Sigrist, C. J. A., Thomas, P. D., Valentin, F., Wilson, D., Wu, C. H. & Yeats, C., Jan 2007, In : Nucleic acids research.. 35, 1, p. D224-D228

    Research output: Contribution to journalArticle

  77. Published

    Genetic databases

    Attwood, T. K. & Cooper, D. (ed.), 2007, Encyclopaedia of Life Sciences. John Wiley & Sons Ltd

    Research output: Chapter in Book/Report/Conference proceedingChapter

  78. Published

    LRRCE: a cysteine capping motif unique to small leucine-rich repeat proteins and proteoglycans of the extracellular matrix.

    Park, H., Huxley-Jones, J., Attwood, T. K. & Bella, J., 2007, In : BMC Systems Biology. 1, 1

    Research output: Contribution to journalArticle

  79. Published

    MyGrid and UTOPIA: An integrated approach to enacting and visualising in silico experiments in the life sciences

    Pettifer, S., Wolstencroft, K., Alper, P., Attwood, T., Coletta, A., Goble, C., Li, P., McDermott, P., Marsh, J., Oinn, T., Sinnott, J. & Thorne, D., 2007, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. Springer Nature , Vol. 4544. p. 59-70 11 p. (Lectue Notes in Computer Science).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  80. Published

    PFF - an integrated database of residues and fragments critical for protein folding.

    Corpas, C., Sinnott, J., Thorne, D., Pettifer, S., Attwood, T. K. & The PFF Consortium, 2007, In : BMC Systems Biology. 1, 1, P48.

    Research output: Contribution to journalArticle

  81. Published

    The PRINTS protein fingerprint database: functional and evolutionary applications

    Attwood, TK., Mitchell, AL., Gaulton, A., Moulton, G. & Tabernero, L., 2007, Encyclopaedia of genetics, genomics, proteomics & bioinformatics. 3rd. ed. John Wiley & Sons Ltd

    Research output: Chapter in Book/Report/Conference proceedingChapter

  82. 2006
  83. Published

    Oxford Dictionary of Biochemistry and Molecular Biology, Second Edition.

    Attwood, T., Cammack, R., Atwood, T., Campbell, P., Parish, H., Smith, T., Stirling, J. & Vella, F., Aug 2006, 2nd ed. Oxford University Press. 736 p.

    Research output: Book/ReportAnthology

  84. Published

    A Predictor of Membrane Class: Discriminating a-helical and ß-barrel membrane proteins from non-membranous proteins.

    Taylor, PD., Toseland, CP., Attwood, TK. & Flower, DR., 2006, In : Bioinformation. 1, 6

    Research output: Contribution to journalArticle

  85. Published

    Alpha Helical Transmembrane Proteins: Enhanced prediction using a Bayesian approach.

    Attwood, TK., Taylor, PD., Toseland, CP. & Flower, DR., 2006, In : Bioinformation. 1, 6

    Research output: Contribution to journalArticle

  86. Published

    An architecture for visualisation and interactive analysis of proteins

    McDermott, P., Sinnott, J., Thorne, D., Pettifer, S. & Attwood, T., 2006, Proceedings - Fourth International Conference on Coordinated and Multiple Views in Exploratory Visualization, CMV 2006|Proc. Fourth Int. Conf. Coordinated Multiple Views Explor. Visual.. Vol. 2006. p. 55-65 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  87. Published

    Beta Barrel Transmembrane Proteins: Enhanced prediction using a Bayesian approach.

    Taylor, PD., Toseland, CP., Attwood, TK. & Flower, DR., 2006, In : Bioinformation. 1, 6

    Research output: Contribution to journalArticle

  88. Published

    Challenges for protein family annotation

    Mitchell, AL., Selimas, I. & Attwood, TK., 2006, ECML/PKDD-2006.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  89. Published

    Combining algorithms to predict Bacterial protein sub-cellular location: Parallel versus Concurrent implementations.

    Attwood, T. K., Taylor, P. D., Toseland, C. P. & Flower, D. R., 2006, In : Bioinformation. 1, 8, p. 285-289

    Research output: Contribution to journalArticle

  90. Published

    LIPPRED: A web server for accurate prediction of lipoprotein signal sequences and cleavage sites.

    Taylor, P., Toseland, U., Attwood, TK. & Flower, DR., 2006, In : Bioinformation. 1, 5, p. 176-179

    Research output: Contribution to journalArticle

  91. Published

    Multi-class subcellular location prediction for bacterial proteins.

    Taylor, P. D., Attwood, T. K. & Flower, D. R., 2006, In : Bioinformation. 1, 7, p. 260-264

    Research output: Contribution to journalArticle

  92. Published

    Seeking functional clues in GPCR sequences and structures: cautionary tales for bioinformatics (Keynote)

    Attwood, TK., 2006, Hellenic Crystallographic Association Conference.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  93. Published

    TATPred: a Bayesian method for the identification of twin arginine translocation pathway signal sequences.

    Taylor, PD., Toseland, CP., Attwood, TK. & Flower, DR., 2006, In : Bioinformation. 1, 5, p. 184-187

    Research output: Contribution to journalArticle

  94. Published

    Toward bacterial protein sub-cellular location prediction: single-class discrimminant models for all Gram- and Gram+ compartments.

    Taylor, P. D., Toseland, C. P., Attwood, T. K. & Flower, D. R., 2006, In : Bioinformation. 1, 8, p. 276-280

    Research output: Contribution to journalArticle

  95. 2005
  96. Published

    METIS: Multiple extraction techniques for informative sentences

    Mitchell, A. L., Divoli, A., Kim, J. H., Hilario, M., Selimas, I. & Attwood, T. K., 15 Nov 2005, In : Bioinformatics. 21, 22, p. 4196-4197 1 p.

    Research output: Contribution to journalArticle

  97. Published

    BiolE: Extracting informative sentences from the biomedical literature

    Divoli, A. & Attwood, T. K., 1 May 2005, In : Bioinformatics. 21, 9, p. 2138-2139 1 p.

    Research output: Contribution to journalArticle

  98. Published

    InterPro, progress and status in 2005

    Mulder, N. J., Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Binns, D., Bradley, P., Bork, P., Bucher, P., Cerutti, L., Copley, R., Courcelle, E., Das, U., Durbin, R., Fleischmann, W., Gough, J., Haft, D., Harte, N., Hulo, N., Kahn, D. & 20 othersKanapin, A., Krestyaninova, M., Lonsdale, D., Lopez, R., Letunic, I., Madera, M., Maslen, J., McDowall, J., Mitchell, A., Nikolskaya, A. N., Orchard, S., Pagni, M., Ponting, C. P., Quevillon, E., Selengut, J., Sigrist, C. J. A., Silventoinen, V., Studholme, D. J., Vaughan, R. & Wu, C. H., 1 Jan 2005, In : Nucleic acids research.. 33, p. D201-D205

    Research output: Contribution to journalArticle

  99. Published

    An integrated approach to structural and functional motif prediction

    Corpas, M., Thorne, D., Sinnott, J., Pettifer, S. & Attwood, TK., 2005, Exploring protein structure - Haifa, 2005.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  100. Published

    Bioinformatics & Molecular Evolution.

    Attwood, T., Higgs, P. & Atwood, TK., 2005, John Wiley & Sons Ltd.

    Research output: Book/ReportBook

  101. Published

    BioQSpace: An interactive visualisation tool for clustering MEDLINE abstracts

    Divoli, A., Winter, R., Pettifer, S. & Attwood, T., 2005, ECCB-2005.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  102. Published

    EMBER - A European Multimedia Bioinformatics Educational Resource

    Attwood, TK., Selimas, I., Buis, R., Altenburg, R., Herzog, R., Ledent, V., Ghita, V., Fernandes, P., Marques, I. & Brugman, M., 2005, In : Bioscience Education. 6, 1

    Research output: Contribution to journalArticle

  103. Published

    European Multimedia Bioinformatics Educational Resource - A Practical Guide to Bioinformatics

    Attwood, TK., 2005, ETI Information Services Ltd, Amsterdam.

    Research output: Book/ReportAnthology

  104. Published

    Integrated approaches for bioinformatics data analysis and visualisation - challenges, opportunities and new solutions

    Pettifer, S., Sinnott, J. & Attwood, TK., 2005, Data Analysis and Visualisation in Genomics and Proteomics. Azuaje, F. & Dopazo, J. (eds.). Chichester: John Wiley & Sons Ltd, p. 137-152 16 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  105. Published

    Oxford Dictionary of Biochemistry and Molecular Biology

    Attwood, TK. & Cammack, R., 2005, Oxford University Press.

    Research output: Book/ReportAnthology

  106. Published

    Protein family databases: text-mining and annotation

    Divoli, A. & Attwood, TK., 2005, ISMB2005.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  107. Published

    Retrieving reproductive biology literature using natural language processing.

    Farhan, R., Aplin, JD., Attwood, TK. & Sibley, C., 2005, In : Placenta. 26, 8-9

    Research output: Contribution to journalArticle

  108. Published

    Text-mining challenges for protein family database annotation

    Divoli, A. & Attwood, TK., 2005, ISBM2005.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  109. Published

    Viewing annotated aspergillus genomes on the central aspergillus data repository (CADRE) website.

    Gilsenan, JE. M., Anderson, MJ., Attwood, TK., Oliver, SG., Paton, NW., Robson, GD. & Denning, DW., 2005, host publication.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  110. 2004
  111. Published

    Integrative bioinformatics for functional genome annotation: Trawling for G protein-coupled receptors

    Flower, D. R. & Attwood, T. K., Dec 2004, In : Seminars in Cell and Developmental Biology. 15, 6, p. 693-701 8 p.

    Research output: Contribution to journalArticle

  112. Published

    FAN: Fingerprint analysis of nucleotide sequences

    Maudling, N. & Attwood, T. K., 1 Jul 2004, In : Nucleic acids research.. 32, p. W620-W623

    Research output: Contribution to journalArticle

  113. Published

    UTOPIA - User-friendly tools for operating informatics applications

    Pettifer, S. R., Sinnott, J. R. & Attwood, T. K., Feb 2004, In : Comparative and Functional Genomics. 5, 1, p. 56-60 4 p.

    Research output: Contribution to journalArticle

  114. Published

    CADRE: The Central Aspergillus Data REpository

    Gilsenan Mabey, J., Anderson, M. J., Giles, P. F., Miller, C. J., Attwood, T. K., Paton, N. W., Bornberg-Bauer, E., Robson, G. D., Oliver, S. G. & Denning, D. W., 1 Jan 2004, In : Nucleic acids research.. 32, p. D401-D405

    Research output: Contribution to journalArticle

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