Mr Stian Soiland-Reyes

Technical Architect

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Publications

  1. 2020
  2. Published

    The role of metadata in reproducible computational research

    Leipzig, J., Nüst, D., Hoyt, C. T., Soiland-Reyes, S., Ram, K. & Greenberg, J., 15 Jun 2020, 59 p.

    Research output: Working paper

  3. Published

    ISO 23494: Biotechnology - Provenance Information Model for Biological Specimen and Data: Provenance Week 2020 Poster

    Wittner, R., Holub, P., Geiger, J., Müller, H., Goble, C., Soiland-Reyes, S., Fairweather, E., Pirredu, L., Frexia, F., Mascia, C., Zanetti, G., Nakae, H., Strambio, C., Moore, J., Grunwald, D. & Swedlow, J., 1 Jun 2020. 3 p.

    Research output: Contribution to conferencePoster

  4. 2019
  5. Published

    FAIR Computational Workflows

    Goble, C., Cohen-Boulakia, S., Soiland-Reyes, S., Garijo, D., Gil, Y., Crusoe, M. R., Peters, K. & Schober, D., 1 Nov 2019, In : Data Intelligence. 2, 1, p. 108–121 14 p.

    Research output: Contribution to journalArticle

  6. Published

    Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv

    Khan, F. Z., Soiland-Reyes, S., Sinnott, R. O., Lonie, A., Goble, C. & Crusoe, M. R., 1 Nov 2019, In : GigaScience. 8, 11, 27 p., giz095.

    Research output: Contribution to journalArticle

  7. Published

    Unique, Persistent, Resolvable: Identifiers as the foundation of FAIR

    Juty, N., Wimalaratne, S. M., Soiland-Reyes, S., Kunze, J., Goble, C. A. & Clark, T., 1 Nov 2019, In : Data Intelligence. 2, 1, p. 30–39 10 p.

    Research output: Contribution to journalArticle

  8. Published

    BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows

    Andrio, P., Hospital, A., Conejero, J., Jordá, L., Del Pino, M., Codo, L., Soiland-reyes, S., Goble, C., Lezzi, D., Badia, R. M., Orozco, M. & Gelpi, J. L., 10 Sep 2019, In : Scientific Data. 6, 1, 8 p., 169.

    Research output: Contribution to journalArticle

  9. E-pub ahead of print

    A lightweight approach to research object data packaging

    Ó Carragáin, E., Goble, C., Sefton, P. & Soiland-Reyes, S., 20 Jun 2019.

    Research output: Contribution to conferenceAbstract

  10. Published

    Bioexcel building blocks test cases

    Andrio, P., Hospital, A., Conejero, J., Jordá, L., Del Pino, M., Codo, L., Soiland-Reyes, S., Goble, C., Lezzi, D., Badia, R., Orozco, M. & Gelpi, J. L., 18 Feb 2019

    Research output: Non-textual formData set/Database

  11. 2018
  12. Published

    Enabling precision medicine via standard communication of HTS provenance, analysis, and results

    Alterovitz, G., Dean, D., Goble, C., Crusoe, M. R., Soiland-Reyes, S., Bell, A., Hayes, A., Suresh, A., Purkayastha, A., King, C. H. S., Taylor, D., Johanson, E., Thompson, E. E., Donaldson, E., Morizono, H., Tsang, H., Vora, J. K., Goecks, J., Yao, J., Almeida, J. S. & 17 others, Keeney, J., Addepalli, K., Krampis, K., Smith, K. M., Guo, L., Walderhaug, M., Schito, M., Ezewudo, M., Guimera, N., Walsh, P., Kahsay, R., Gottipati, S., Rodwell, T. C., Bloom, T., Lai, Y., Simonyan, V. & Mazumder, R., 31 Dec 2018, In : PLoS Biology. 16, 12, 18 p., e3000099.

    Research output: Contribution to journalArticle

  13. Published

    The Archive and Package (arcp) URI scheme

    Soiland-Reyes, S. & Cáceres, M., 27 Dec 2018, 2018 IEEE 14th International Conference on e-Science (e-Science). IEEE, 5 p. 18

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  14. Published

    CWL run of Alignment Workflow: CWLProv 0.6.0 Research Object

    Khan, F. Z. & Soiland-Reyes, S., 4 Dec 2018

    Research output: Non-textual formData set/Database

  15. Published

    CWL run of RNA-seq Analysis Workflow: CWLProv 0.5.0 Research Object

    Khan, F. Z. & Soiland-Reyes, S., 4 Dec 2018

    Research output: Non-textual formData set/Database

  16. Published

    CWL run of Somatic Variant Calling Workflow: CWLProv 0.5.0 Research Object

    Khan, F. Z. & Soiland-Reyes, S., 4 Dec 2018

    Research output: Non-textual formData set/Database

  17. Published

    Capturing interoperable reproducible workflows

    Soiland-Reyes, S., Khan, F. Z., Sinnott, R., Lonie, A., Crusoe, M. R. & Goble, C., 29 Oct 2018.

    Research output: Contribution to conferenceAbstract

  18. Accepted/In press

    FAIR Bioinformatics computation and data management: FAIRDOM and the Norwegian Digital Life initiative

    Stanford, N., Bacall, F., Zamanzad Ghavidel, F., Golebiewski, M., Jonassen, I., Kleppe, R., Krebs, O., Leonov, H., Owen, S., Peterson, K., Rey, M., Soiland-Reyes, S., Tekle, K., Weiderman, A., Williams, A., Wittig, U., Wolstencroft, K., Goksøyr, A., Snoep, J., Vik, J. O. & 2 others, Müller, W. & Goble, C., 4 Sep 2018, (Accepted/In press). 4 p.

    Research output: Contribution to conferenceAbstract

  19. Published
  20. Published

    The Archive and Package (arcp) URI scheme: Internet-Draft

    Soiland-Reyes, S. & Cáceres, M., 17 Jan 2018, Internet Engineering Task Force, 21 p.

    Research output: Working paperDiscussion paper

  21. 2017
  22. Published

    Robust cross-platform workflows: How technical and scientific communities collaborate to develop, test and share best practices for data analysis

    Möller, S., Prescott, S. W., Wirzenius, L., Reinholdtsen, P., Chapman, B., Prins, P., Soiland-Reyes, S., Klötzl, F., Bagnacani, A., Kalaš, M., Tille, A. & Crusoe, M. R., 16 Nov 2017, In : Data Science and Engineering.

    Research output: Contribution to journalArticle

  23. Published

    CWL Viewer v.1.1.0: common-workflow-language/cwlviewer

    Robinson, M., Soiland-Reyes, S., Crusoe, M. R. & Goble, C., 11 Aug 2017

    Research output: Non-textual formSoftware

  24. Published

    Common Workflow Language Viewer: (Talk)

    Robinson, M., Soiland-Reyes, S., Crusoe, M. R. & Goble, C., 22 Jul 2017.

    Research output: Contribution to conferenceAbstract

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Research Explorer downloads

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Research output: Book/ReportCommissioned report

325

Research output: Book/ReportCommissioned report

281

Research output: Contribution to journalArticle