Mr Stian Soiland-Reyes

Technical Architect

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Publications

  1. Article › Research › Not peer-reviewed
  2. Published

    Web annotation as a first-class object

    Ciccarese, P., Soiland-Reyes, S. & Clark, T., Nov 2013, In : IEEE Internet Computing. 17, 6, p. 71-75 4 p., 6682930.

    Research output: Contribution to journalArticle

  3. Article › Research › Peer-reviewed
  4. Published

    Automated manipulation of systems biology models using libSBML within Taverna workflows

    Li, P., Oinn, T., Soiland, S., Kell, D. B. & Soiland-Reyes, S., 15 Jan 2008, In : Bioinformatics. 24, 2, p. 287-289 2 p.

    Research output: Contribution to journalArticle

  5. Published

    BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows

    Andrio, P., Hospital, A., Conejero, J., Jordá, L., Del Pino, M., Codo, L., Soiland-reyes, S., Goble, C., Lezzi, D., Badia, R. M., Orozco, M. & Gelpi, J. L., 10 Sep 2019, In : Scientific Data. 6, 1, 8 p., 169.

    Research output: Contribution to journalArticle

  6. Published

    CaGrid workflow toolkit: A taverna based workflow tool for cancer grid

    Tan, W., Madduri, R., Nenadic, A., Soiland-Reyes, S., Sulakhe, D., Foster, I. & Goble, C. A., 2 Nov 2010, In : BMC Bioinformatics. 11, 542.

    Research output: Contribution to journalArticle

  7. Published

    COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project

    Bergmann, F. T., Adams, R., Moodie, S., Cooper, J., Glont, M., Golebiewski, M., Hucka, M., Laibe, C., Miller, A. K., Nickerson, D. P., Olivier, B. G., Rodriguez, N., Sauro, H. M., Scharm, M., Soiland-Reyes, S., Waltemath, D., Yvon, F. & Le Novère, N., 2014, In : BMC Bioinformatics. 15, p. 369

    Research output: Contribution to journalArticle

  8. Published

    Community-driven development for computational biology at Sprints, Hackathons and Codefests

    Möller, S., Afgan, E., Banck, M., Bonnal, R. J. P., Booth, T., Chilton, J., Cock, P. J. A., Gumbel, M., Harris, N., Holland, R., Kalaš, M., Kaján, L., Powell, D. R., Prins, P., Quinn, J., Sallou, O., Strozzi, F., Seemann, T., Sloggett, C., Soiland-Reyes, S. & 6 others, Steinbiss, S., Tille, A., Travis, A. J., Guimera, R. V., Katayama, T. & Chapman, B. A., 2014, In : B M C Bioinformatics.

    Research output: Contribution to journalArticle

  9. Published

    Enabling precision medicine via standard communication of HTS provenance, analysis, and results

    Alterovitz, G., Dean, D., Goble, C., Crusoe, M. R., Soiland-Reyes, S., Bell, A., Hayes, A., Suresh, A., Purkayastha, A., King, C. H. S., Taylor, D., Johanson, E., Thompson, E. E., Donaldson, E., Morizono, H., Tsang, H., Vora, J. K., Goecks, J., Yao, J., Almeida, J. S. & 17 others, Keeney, J., Addepalli, K., Krampis, K., Smith, K. M., Guo, L., Walderhaug, M., Schito, M., Ezewudo, M., Guimera, N., Walsh, P., Kahsay, R., Gottipati, S., Rodwell, T. C., Bloom, T., Lai, Y., Simonyan, V. & Mazumder, R., 31 Dec 2018, In : PLoS Biology. 16, 12, 18 p., e3000099.

    Research output: Contribution to journalArticle

  10. Published

    FAIR Computational Workflows

    Goble, C., Cohen-Boulakia, S., Soiland-Reyes, S., Garijo, D., Gil, Y., Crusoe, M. R., Peters, K. & Schober, D., 1 Nov 2019, In : Data Intelligence. 2, 1, p. 108–121 14 p.

    Research output: Contribution to journalArticle

  11. Published

    FAIRDOMHub: a repository and collaboration environment for sharing systems biology research

    Wolstencroft, K., Krebs, O., Snoep, J., Stanford, N. J., Bacall, F., Golebiewski, M., Kuzyakiv, R., Nguyen, Q., Owen, S., Soiland-Reyes, S., Straszewski, J., van Niekerk, D. D., Williams, A., Malmström, L., Rinn, B., Müller, W. & Goble, C., 2016, In : Nucleic acids research. 45, D1, p. D404-D407 4 p.

    Research output: Contribution to journalArticle

  12. Published

    From workflows to Research Objects: an architecture for preserving the semantics of science

    Page, K., Palma, R., Hołubowicz, P., Klyne, G., Soiland-Reyes, S., Cruickshank, D., González-Cabero, R., García-Cuesta, E., De Roure, D. & Zhao, J., 22 Oct 2012, In : Proceedings of the 2nd International Workshop on Linked Science.

    Research output: Contribution to journalArticle

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