Prof Simon HubbardBSc, PhD

Professor of Computational Biology

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Publications

  1. 2017
  2. Accepted/In press

    Dynamic changes in eIF4F-mRNA interactions revealed by global analyses of environmental stress responses

    Costello, J. L., Kershaw, C., Castelli, L. M., Talavera, D., Rowe, W., Sims, P. F. G., Ashe, M., Grant, C., Hubbard, S. & Pavitt, G. D. 11 Oct 2017 In : Genome Biology.

    Research output: Contribution to journalArticle

  3. Published

    Dynamic Acclimation to High Light in Arabidopsis thaliana Involves Widespread Reengineering of the Leaf Proteome

    Miller, M., O'Cualain, R., Selley, J., Knight, D., Karim, M., Hubbard, S. & Johnson, G. 2017 In : Frontiers in Plant Science.

    Research output: Contribution to journalArticle

  4. 2016
  5. Published

    Absolute protein quantification of the yeast chaperome under conditions of heat shock

    Mackenzie, R. J., Lawless, C., Holman, S. W., Lanthaler, K., Beynon, R. J., Grant, C. M., Hubbard, S. J. & Eyers, C. E. 20 Aug 2016 In : Proteomics. 16, 15-16, p. 2128-2140 13 p.

    Research output: Contribution to journalArticle

  6. Published

    Analysis of intrinsic peptide detectability via integrated label-free and SRM-based absolute quantitative proteomics

    Jarnuczak, A., Lee, D., Lawless, C., Holman, S. W., Eyers, C. E. & Hubbard, S. 25 Jul 2016 In : Journal of Proteome Research. 15, 9, p. 2945–2959 15 p.

    Research output: Contribution to journalArticle

  7. Published

    Direct and Absolute Quantification of over 1800 Yeast Proteins via Selected Reaction Monitoring.

    Lawless, C., Holman, S. W., Brownridge, P., Lanthaler, K., Harman, V. M., Watkins, R., Hammond, D. E., Miller, R. L., Sims, P. F. G., Grant, C., Eyers, C. E., Beynon, R. J. & Hubbard, S. 10 Jan 2016 In : Molecular and Cellular Proteomics. 15, 4, p. 1309-1322

    Research output: Contribution to journalArticle

  8. 2015
  9. Published

    The mzqLibrary - an open source Java library supporting the HUPO-PSI quantitative proteomics standard.

    Qi, D., Zhang, H., Fan, J., Perkins, S., Pisconti, A., Simpson, D. M., Bessant, C., Hubbard, S. & Jones, A. R. 2 Jun 2015 In : Proteomics. 15, 18, p. 3152–3162 11 p.

    Research output: Contribution to journalArticle

  10. Published

    The 4E-BP Caf20p Mediates Both eIF4E-Dependent and Independent Repression of Translation.

    Castelli, L. M., Talavera, D., Kershaw, C., Mohammad-Qureshi, S. S., Costello, J. L., Rowe, W., Sims, P. F. G., Grant, C. M., Hubbard, S. J., Ashe, M. P. & Pavitt, G. D. May 2015 In : PL o S Genetics. 11, 5, e1005233

    Research output: Contribution to journalArticle

  11. Published

    Representation of selected-reaction monitoring data in the mzQuantML data standard.

    Qi, D., Lawless, C., Teleman, J., Levander, F., Holman, S. W., Hubbard, S. & Jones, A. R. 17 Apr 2015 In : Proteomics. 15, 15, p. 2592–2596 5 p.

    Research output: Contribution to journalArticle

  12. Published

    Quantitative proteomics and network analysis of SSA1 and SSB1 deletion mutants reveals robustness of chaperone HSP70 network in Saccharomyces cerevisiae

    Jarnuczak, A., Eyers, C. E., Schwartz, J-M., Grant, C. & Hubbard, S. 10 Apr 2015 In : Proteomics. 15, 18, p. 3126-3139 13 p.

    Research output: Contribution to journalArticle

  13. Published

    Global mRNA selection mechanisms for translation initiation.

    Costello, J., Castelli, L. M., Rowe, W., Kershaw, C., Talavera, D., Mohammad-Qureshi, S. S., Sims, P. F. G., Grant, C. M., Pavitt, G. D., Hubbard, S. J. & Ashe, M. 2015 In : Genome biology. 16, 1, p. 10 10

    Research output: Contribution to journalArticle

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