Prof Sam Griffiths-Jones

Professor of Computational Biology

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Publications

  1. 2020
  2. Published

    The Transcription Factor-microRNA Regulatory Network during hESC-chondrogenesis

    Griffiths, R., Woods, S., Cheng, A., Wang, P., Griffiths-Jones, S., Ronshaugen, M. & Kimber, S. J., 16 Mar 2020, In : Scientific Reports. 10, 1, 4744.

    Research output: Contribution to journalArticle

  3. Published

    Enhanced genome assembly and a new official gene set for Tribolium castaneum

    Herndon, N., Shelton, J., Gerischer, L., Ioannidis, P., Ninova, M., Dönitz, J., Waterhouse, R. M., Liang, C., Damm, C., Siemanowski, J., Kitzmann, P., Ulrich, J., Dippel, S., Oberhofer, G., Hu, Y., Schwirz, J., Schacht, M., Lehmann, S., Montino, A., Posnien, N. & 25 others, Gurska, D., Horn, T., Seibert, J., Vargas Jentzsch, I. M., Panfilio, K. A., Li, J., Wimmer, E. A., Stappert, D., Roth, S., Schröder, R., Park, Y., Schoppmeier, M., Chung, H. R., Klingler, M., Kittelmann, S., Friedrich, M., Chen, R., Altincicek, B., Vilcinskas, A., Zdobnov, E., Griffiths-Jones, S., Ronshaugen, M., Stanke, M., Brown, S. J. & Bucher, G., 14 Jan 2020, In : BMC Genomics. 21, 1, 1 p.

    Research output: Contribution to journalArticle

  4. Published

    Restoring the constitutional alignment with a restrictive kinematic protocol improves quantitative soft-tissue balance in total knee arthroplasty: a randomized controlled trial

    MacDessi, S. J., Griffiths-Jones, W., Chen, D. B., Griffiths-Jones, S., Wood, J. A., Diwan, A. D. & Harris, I. A., 1 Jan 2020, In : The Bone & Joint Journal. 102-B, 1, p. 117-124 8 p.

    Research output: Contribution to journalArticle

  5. 2019
  6. Published

    miRBase: from microRNA sequences to function

    Kozomara, A., Birgaoanu, M. & Griffiths-Jones, S., 8 Jan 2019, In : Nucleic acids research. 47, D1, p. D155-D162 8 p.

    Research output: Contribution to journalArticle

  7. Published

    RNAcentral: a hub of information for non-coding RNA sequences

    The RNAcentral Consortium & Griffiths-Jones, S., 8 Jan 2019, In : Nucleic acids research. 47, D1, p. D221-D229

    Research output: Contribution to journalArticle

  8. 2018
  9. Published

    Large-scale profiling of noncoding RNA function in yeast

    Parker, S., Fraczek, M., Wu, J., Shamsah, S., Manousaki, A., Dungrattanalert, K., Almeida, R., Invernizzi, E., Burgis, T., Omara, W., Griffiths-Jones, S., Delneri, D. & O'Keefe, R., 13 Mar 2018, In : PL o S Genetics. 14, 3, 14(3): e1007253.

    Research output: Contribution to journalArticle

  10. 2017
  11. Published

    Abundant expression of somatic transposon-derived piRNAs throughout Tribolium castaneum embryogenesis

    Ninova, M., Griffiths-Jones, S. & Ronshaugen, M., 26 Sep 2017, In : Genome biology. 18, 184

    Research output: Contribution to journalArticle

  12. Published

    The house spider genome reveals an ancient whole-genome duplication during arachnid evolution

    Schwager, E. E., Sharma, P., Clarke, T., Leite, D. J., Wierschin, T., Pechmann, M., Akiyama-Oda, Y., Esposito, L., Bechsgaard, J., Bilde, T., Buffry, A. D., Chao, H., Dinh, H. H., Doddapaneni, H. V., Dugan-Rocha, S., Eibner, C., Extavour, C. G., Funch, P., Garb, J., Gonzalez, L. B. & 35 others, Gonzalez, V. L., Griffiths-Jones, S., Han, Y., Hayashi, C., Hilbrant, M., Hughes, D. S. T., Janssen, R., Lee, S. L., Maeso, I., Murali, S. C., Muzny, D. M., Nunes da Fonseca, R., Paese, C. L. B., Qu, J., Ronshaugen, M., Schomburg, C., Schönauer, A., Stollewerk, A., Torres-Oliva, M., Turetzek, N., Vanthournout, B., Werren, J. H., Wolff, C., Worley, K. C., Bucher, G., Gibbs, R. A., Coddington, J., Oda, H., Stanke, M., Ayoub, N. A., Prpic, N. M., Flot, J. F., Posnien, N., Richards, S. & McGregor, A. P., 31 Jul 2017, In : BMC Biology. 15, 1, 62.

    Research output: Contribution to journalArticle

  13. Published

    RNAcentral: A comprehensive database of non-coding RNA sequences

    Petrov, A. I., Kay, S. J. E., Kalvari, I., Howe, K. L., Gray, K. A., Bruford, E. A., Kersey, P. J., Cochrane, G., Finn, R. D., Bateman, A., Kozomara, A., Griffiths-Jones, S., Frankish, A., Zwieb, C. W., Lau, B. Y., Williams, K. P., Chan, P. P., Lowe, T. M., Cannone, J. J., Gutell, R. R. & 31 others, Machnicka, M. A., Bujnicki, J. M., Yoshihama, M., Kenmochi, N., Chai, B., Cole, J. R., Szymanski, M., Karlowski, W. M., Wood, V., Huala, E., Berardini, T. Z., Zhao, Y., Chen, R., Zhu, W., Paraskevopoulou, M. D., Vlachos, I. S., Hatzigeorgiou, A. G., Ma, L., Zhang, Z., Puetz, J., Stadler, P. F., McDonald, D., Basu, S., Fey, P., Engel, S. R., Cherry, J. M., Volders, P. J., Mestdagh, P., Wower, J., Clark, M. & The RNAcentral Consortium, Jan 2017, In : Nucleic acids research. 45, D1, p. D128-D134

    Research output: Contribution to journalArticle

  14. Published

    Small RNAs: Big Impact on Plant Development

    de Marco, A., Griffiths-Jones, S. & Kim, M., 2017, In : Trends in Plant Science.

    Research output: Contribution to journalArticle

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