Prof Magnus Rattray

Professor Computational &Systems Biology

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Publications

  1. 2020
  2. Published

    Longitudinal immune profiling reveals key myeloid signatures associated with COVID-19

    Mann, E. R., Menon, M., Knight, S. B., Konkel, J. E., Jagger, C., Shaw, T. N., Krishnan, S., Rattray, M., Ustianowski, A., Bakerly, N. D., Dark, P., Lord, G., Simpson, A., Felton, T., Ho, L-P., Feldmann, M., Grainger, J. R. & Hussell, T., 17 Sep 2020, In : Science Immunology.

    Research output: Contribution to journalArticle

  3. Published

    Analysis of chromatin organization and gene expression in T cells identifies functional genes for rheumatoid arthritis

    Yang, J., Mcgovern, A., Martin, P., Duffus, K., Ge, X., Zarrineh, P., Morris, A., Adamson, A., Fraser, P., Rattray, M. & Eyre, S., 2 Sep 2020, In : Nature Communications. 11, 4402.

    Research output: Contribution to journalArticle

  4. E-pub ahead of print

    Using functional genomics to advance the understanding of psoriatic arthritis

    Shi, C., Rattray, M., Barton, A., Bowes, J. & Orozco, G., 10 Aug 2020, In : Rheumatology (Oxford).

    Research output: Contribution to journalArticle

  5. Published

    HiChIP-Peaks: A HiChIP peak calling algorithm

    Shi, C., Rattray, M. & Orozco, G., 24 Mar 2020, In : Bioinformatics (Oxford, England). 36, 12, p. 3625-3631

    Research output: Contribution to journalArticle

  6. Accepted/In press

    OscoNet: Inferring oscillatory gene networks

    Boukouvalas, A., Cutillo, L., Marinopoulou, E., Papalopulu, N. & Rattray, M., 21 Mar 2020, (Accepted/In press) In : bioRxiv.

    Research output: Contribution to journalArticle

  7. Published

    Uncovering tissue-specific binding features from differential deep learning

    Phuycharoen, M., Zarrineh, P., Bridoux, L., Amin, S., Losa, M., Chen, K., Bobola, N. & Rattray, M., 24 Jan 2020, In : Nucleic Acids Res.

    Research output: Contribution to journalArticle

  8. 2019
  9. Published

    Quantitative single-cell live imaging links HES5 dynamics with cell-state and fate in murine neurogenesis

    Manning, C., Biga, V., Boyd, J., Kursawe, J., Ymisson, B., Spiller, D., Sanderson, C. M., Galla, T., Rattray, M. & Papalopulu, A., 27 Jun 2019, In : Nature Communications. 2835 .

    Research output: Contribution to journalArticle

  10. Published

    Classifying cells with Scasat, a single-cell ATAC-seq analysis tool

    Murtuza Baker, S., Rogerson, C., Hayes, A., Sharrocks, A. & Rattray, M., 25 Jan 2019, In : Nucleic acids research. 47, 2

    Research output: Contribution to journalArticle

  11. Published

    Bayesian Detection of Piecewise Linear Trends in Replicated Time-Series with Application to Growth Data Modelling

    Papastamoulis, P., Furukawa, T., van Rhijn, N., Bromley, M., Bignell, E. & Rattray, M., 2019, In : International Journal of Biostatistics.

    Research output: Contribution to journalArticle

  12. Published

    Genome-wide effect of pulmonary airway epithelial cell–specific Bmal1 deletion

    Zhang, Z., Hunter, L., Wu, G., Maidstone, R., Mizoro, Y., Vonslow, R., Fife, M., Hopwood, T., Begley, N., Saer, B., Wang, P., Cunningham, P., Baxter, M., Durrington, H., Blaikley, J. F., Hussell, T., Rattray, M., Hogenesch, J. B., Gibbs, J., Ray, D. W. & 1 others, Loudon, A. S. I., 2019, In : The FASEB journal : official publication of the Federation of American Societies for Experimental Biology. p. fj.201801682R

    Research output: Contribution to journalArticle

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