Prof Magnus Rattray

Professor Computational &Systems Biology

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Publications

  1. 2017
  2. Published

    Predicting stimulation-dependent 1 enhancer-promoter interactions from 2 ChIP-Seq time course data

    Dzida, T., Iqbal, M., Charapitsa, I., Stunnenberg, H., Matarese, F., Honkela, A. & Rattray, M. 28 Sep 2017 In : PeerJ. 5

    Research output: Contribution to journalArticle

  3. Accepted/In press

    Efficient Inference for Sparse Latent Variable Models of Transcriptional Regulation

    Dai, Z., Iqbal, M., Lawrence, N. D. & Rattray, M. 7 Aug 2017 In : Bioinformatics.

    Research output: Contribution to journalArticle

  4. Published

    BayesBinMix: an R Package for Model Based Clustering of Multivariate Binary Data

    Papastamoulis, P. & Rattray, M. 10 May 2017 In : The R Journal.

    Research output: Contribution to journalArticle

  5. Published

    A Bayesian model selection approach for identifying differentially expressed transcripts from RNA-Seq data

    Papastamoulis, P. & Rattray, M. 2017 In : Journal of the Royal Statistical Society. Series C: Applied Statistics.

    Research output: Contribution to journalArticle

  6. Published

    Identifying stochastic oscillations in single-cell live imaging time series using Gaussian processes

    Phillips, N., Manning, C., Papalopulu, A. & Rattray, M. 2017 In : PL o S Computational Biology.

    Research output: Contribution to journalArticle

  7. 2016
  8. Published

    Erratum to: Making sense of big data in health research: towards an EU action plan

    Auffray, C. , Balling, R. , Barroso, I. , Bencze, L. , Benson, M. , Bergeron, J. , Bernal-Delgado, E. , Blomberg, N. , Bock, C. , Conesa, A. , Del Signore, S. , Delogne, C. , Devilee, P. , Di Meglio, A. , Eijkemans, M. , Flicek, P. , Graf, N. , Grimm, V. , Guchelaar, H-J. , Guo, Y-K. & 37 others Gut, I. G., Hanbury, A., Hanif, S., Hilgers, R-D., Honrado, Á., Hose, D. R., Houwing-Duistermaat, J., Hubbard, T., Janacek, S. H., Karanikas, H., Kievits, T., Kohler, M., Kremer, A., Lanfear, J., Lengauer, T., Maes, E., Meert, T., Müller, W., Nickel, D., Oledzki, P., Pedersen, B., Petkovic, M., Pliakos, K., Rattray, M., I Màs, J. R., Schneider, R., Sengstag, T., Serra-Picamal, X., Spek, W., Vaas, L. A. I., van Batenburg, O., Vandelaer, M., Varnai, P., Villoslada, P., Vizcaíno, J. A., Wubbe, J. P. M. & Zanetti, G. 7 Nov 2016 In : Genome Medicine. 8, 1, p. 118

    Research output: Contribution to journalArticle

  9. Published

    Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation

    Phillips, N., Manning, C., Pettini, T., Biga, V., Marinopoulou, E., Stanley, P., Boyd, J., Bagnall, J., Paszek, P., Spiller, D., White, M., Goodfellow, M., Galla, T., Rattray, M. & Papalopulu, N. 4 Oct 2016 In : eLife. 5, e16118

    Research output: Contribution to journalArticle

  10. Published

    Inferring the perturbation time from biological time course data

    Yang, J., Penfold, C. P., Grant, M. & Rattray, M. 1 Oct 2016 In : Bioinformatics. 32, 19, p. 2956-2964 9 p.

    Research output: Contribution to journalArticle

  11. Published

    Making sense of big data in health research: Towards an EU action plan

    Auffray, C. , Balling, R. , Barroso, I. , Bencze, L. , Benson, M. , Bergeron, J. , Bernal-Delgado, E. , Blomberg, N. , Bock, C. , Conesa, A. , Del Signore, S. , Delogne, C. , Devilee, P. , Di Meglio, A. , Eijkemans, M. , Flicek, P. , Graf, N. , Grimm, V. , Guchelaar, H-J. , Guo, Y-K. & 37 others Gut, I. G., Hanbury, A., Hanif, S., Hilgers, R-D., Honrado, Á., Hose, D. R., Houwing-Duistermaat, J., Hubbard, T., Janacek, S. H., Karanikas, H., Kievits, T., Kohler, M., Kremer, A., Lanfear, J., Lengauer, T., Maes, E., Meert, T., Müller, W., Nickel, D., Oledzki, P., Pedersen, B., Petkovic, M., Pliakos, K., Rattray, M., I Màs, J. R., Schneider, R., Sengstag, T., Serra-Picamal, X., Spek, W., Vaas, L. A. I., van Batenburg, O., Vandelaer, M., Varnai, P., Villoslada, P., Vizcaíno, J. A., Wubbe, J. P. M. & Zanetti, G. 23 Jun 2016 In : Genome Medicine. 8, 1, p. 71

    Research output: Contribution to journalArticle

  12. 2015
  13. Published

    Fast and accurate approximate inference of transcript expression from RNA-seq data

    Hensman, J., Papastamoulis, P., Glaus, P., Honkela, A. & Rattray, M. 26 Aug 2015 In : Bioinformatics. 31, 24, p. 3881-3889 9 p.

    Research output: Contribution to journalArticle

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