Prof Magnus Rattray

Professor Computational &Systems Biology

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Publications

  1. 2019
  2. Published

    Classifying cells with Scasat, a single-cell ATAC-seq analysis tool

    Murtuza Baker, S., Rogerson, C., Hayes, A., Sharrocks, A. & Rattray, M., 25 Jan 2019, In : Nucleic acids research. 47, 2

    Research output: Contribution to journalArticle

  3. Published

    Genome-wide effect of pulmonary airway epithelial cell–specific Bmal1 deletion

    Zhang, Z., Hunter, L., Wu, G., Maidstone, R., Mizoro, Y., Vonslow, R., Fife, M., Hopwood, T., Begley, N., Saer, B., Wang, P., Cunningham, P., Baxter, M., Durrington, H., Blaikley, J. F., Hussell, T., Rattray, M., Hogenesch, J. B., Gibbs, J., Ray, D. W. & 1 othersLoudon, A. S. I., 2019, In : The FASEB journal : official publication of the Federation of American Societies for Experimental Biology. p. fj.201801682R

    Research output: Contribution to journalArticle

  4. Published

    Rheumatoid arthritis reprograms circadian output pathways

    Poolman, T. M., Gibbs, J., Walker, A. L., Dickson, S., Farrell, L., Hensman, J., Kendall, A. C., Maidstone, R., Warwood, S., Loudon, A., Rattray, M., Bruce, I. N., Nicolaou, A. & Ray, D. W., 2019, In : Arthritis Research & Therapy. 21, 1

    Research output: Contribution to journalArticle

  5. 2018
  6. Published

    REVERBa couples the circadian clock to hepatic glucocorticoid action

    Caratti, G., Iqbal, M., Hunter, L., Kim, D., Wang, P., Vonslow, R. M., Begley, N., Tetley, A. J., Woodburn, J. L., Pariollaud, M., Maidstone, R., Donaldson, I. J., Zhang, Z., Ince, L. M., Kitchen, G., Baxter, M., Poolman, T. M., Daniels, D. A., Stirling, D. R., Brocker, C. & 6 othersGonzalez, F., Loudon, A. S., Bechtold, D. A., Rattray, M., Matthews, L. C. & Ray, D. W., 1 Oct 2018, In : The Journal of clinical investigation. 128, 10, p. 4454-4471

    Research output: Contribution to journalArticle

  7. E-pub ahead of print

    GrandPrix: Scaling up the Bayesian GPLVM for single-cell data

    Ahmed, S., Rattray, M. & Boukouvalas, A., 2 Jul 2018, In : Bioinformatics.

    Research output: Contribution to journalArticle

  8. Published

    BGP: identifying gene-specific branching dynamics from single cell data with a branching Gaussian process

    Boukouvalas, A., Hensman, J. & Rattray, M., 29 May 2018, In : Genome biology. 19, 65

    Research output: Contribution to journalArticle

  9. Published

    Cytokine responses to rhinovirus and development of asthma, allergic sensitization and respiratory infections during childhood

    Custovic, A., Belgrave, D., Lin, L., Bakhsoliani, E., Telcian, A. G., Solari, R., Murray, C., Walton, R. P., Curtin, J., Edwards, M. R., Simpson, A., Rattray, M. & Johnston, S. L., 15 May 2018, In : American Journal of Respiratory and Critical Care Medicine. 197, 10

    Research output: Contribution to journalArticle

  10. Published

    Evolution of IgE responses to multiple allergen components throughout childhood

    Howard, R., Belgrave, D., Papastamoulis, P., Simpson, A., Rattray, M. & Custovic, A., 2018, In : Journal of Allergy and Clinical Immunology.

    Research output: Contribution to journalArticle

  11. 2017
  12. Published

    Efficient Inference for Sparse Latent Variable Models of Transcriptional Regulation

    Dai, Z., Iqbal, M., Lawrence, N. D. & Rattray, M., 1 Dec 2017, In : Bioinformatics. 33, 23, p. 3776–3783

    Research output: Contribution to journalArticle

  13. Published

    Predicting stimulation-dependent 1 enhancer-promoter interactions from 2 ChIP-Seq time course data

    Dzida, T., Iqbal, M., Charapitsa, I., Stunnenberg, H., Matarese, F., Honkela, A. & Rattray, M., 28 Sep 2017, In : PeerJ. 5

    Research output: Contribution to journalArticle

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