Prof Magnus Rattray

Professor Computational &Systems Biology

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Publications

  1. 2021
  2. Published

    Murine AGM single-cell profiling identifies a continuum of hemogenic endothelium differentiation marked by ACE

    Fadlullah, M. Z. H., Neo, WH., Lie-A-Ling, M., Thambyrajah, R., Patel, R., Mevel, R., Aksoy, I., Do, K. N., Savatier, P., Fontenille, L., Baker, S. M., Rattray, M., Kouskoff, V. & Lacaud, G., 15 Sep 2021, In: Blood.

    Research output: Contribution to journalArticlepeer-review

  3. Accepted/In press

    Non-parametric modelling of temporal and spatial counts data from RNA-seq experiments

    Bin Tayyash, N., Georgaka, S., John, ST., Ahmed, S., Boukouvalas, A., Hensman, J. & Rattray, M., 28 Jun 2021, (Accepted/In press) In: Bioinformatics (Oxford, England).

    Research output: Contribution to journalArticlepeer-review

  4. Published

    P058 Persistence of neutrophil abnormalities in COVID-19 convalescence

    Williams, T., Kästele, V., Mann, E., Knight, S., Menon, M., Jagger, C., Khan, S., Konkel, J., Shaw, T., Rattray, M., Pearmain, L., Horsley, A., Ustianowski, A., Prise, I. & Hussell, T., Apr 2021, In: Rheumatology (Oxford, England).

    Research output: Contribution to journalArticle

  5. Published

    Chromatin looping links target genes with genetic risk loci for dermatological traits

    Shi, C., Ray-Jones, H., Ding, J., Duffus, K., Fu, Y., Gaddi, V., Gough, O., Hankinson, J., Martin, P., Mcgovern, A., Yarwood, A., Gaffney, P., Eyre, S., Rattray, M., Warren, R. B. & Orozco, G., 2021, In: The Journal of Investigative Dermatology. 141, 8, p. 1975-1984

    Research output: Contribution to journalArticlepeer-review

  6. 2020
  7. Published

    HOX paralogs selectively convert binding of ubiquitous transcription factors into tissue-specific patterns of enhancer activation

    Bridoux, L., Zarrineh, P., Mallen, J., Phuycharoen, M., Latorre, V., Ladam, F., Losa, M., Baker, S. M., Sagerstrom, C., Mace, K. A., Rattray, M. & Bobola, N., 14 Dec 2020, In: PLoS Genetics. 16, 12, p. e1009162 e1009162.

    Research output: Contribution to journalArticlepeer-review

  8. Published

    A model of k-mer surprisal to quantify local sequence information content surrounding splice regions

    Humphrey, S., Kerr, A., Rattray, M., Dive, C. & Miller, C., 4 Nov 2020, In: PeerJ.

    Research output: Contribution to journalArticlepeer-review

  9. Published

    Longitudinal immune profiling reveals key myeloid signatures associated with COVID-19

    Mann, E. R., Menon, M., Knight, S. B., Konkel, J. E., Jagger, C., Shaw, T. N., Krishnan, S., Rattray, M., Ustianowski, A., Bakerly, N. D., Dark, P., Lord, G., Simpson, A., Felton, T., Ho, L-P., Feldmann, M., Grainger, J. R., Hussell, T. & Scott, N., 17 Sep 2020, In: Science Immunology. 5, 51, eabd6197.

    Research output: Contribution to journalArticlepeer-review

  10. Published

    Analysis of chromatin organization and gene expression in T cells identifies functional genes for rheumatoid arthritis

    Yang, J., Mcgovern, A., Martin, P., Duffus, K., Ge, X., Zarrineh, P., Morris, A., Adamson, A., Fraser, P., Rattray, M. & Eyre, S., 2 Sep 2020, In: Nature Communications. 11, 4402.

    Research output: Contribution to journalArticlepeer-review

  11. Published

    OscoNet: inferring oscillatory gene networks

    Cutillo, L., Boukouvalas, A., Marinopoulou, E., Papalopulu, N. & Rattray, M., 21 Aug 2020, In: BMC Bioinformatics. 21, Suppl 10, p. 351

    Research output: Contribution to journalArticlepeer-review

  12. Published

    Modulation of the Promoter Activation Rate Dictates the Transcriptional Response to Graded BMP Signaling Levels in the Drosophila Embryo

    Hoppe, C., Bowles, J. R., Minchington, T. G., Sutcliffe, C., Upadhyai, P., Rattray, M. & Ashe, H. L., 5 Aug 2020, In: Developmental cell. 54, 6, p. 727-741.e7

    Research output: Contribution to journalArticlepeer-review

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