Prof Magnus Rattray

Professor Computational &Systems Biology

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Publications

  1. 2022
  2. Published

    Chronic inflammatory arthritis drives systemic changes in circadian energy metabolism

    Downton, P., Sanna, F., Maidstone, R., Poolman, T., Hayter, E., Dickson, S., Early, J., Adamson, A., Spiller, D., Simpkins, D., Baxter, M., Fischer, R., Rattray, M., Loudon, A., Gibbs, J., Bechtold, D. & Ray, D., 3 May 2022, In: PNAS. 2112781119.

    Research output: Contribution to journalArticlepeer-review

  3. Published

    Murine AGM single-cell profiling identifies a continuum of hemogenic endothelium differentiation marked by ACE

    Fadlullah, M. Z. H., Neo, W. H., Lie-a-ling, M., Thambyrajah, R., Patel, R., Mevel, R., Aksoy, I., Do Khoa, N., Savatier, P., Fontenille, L., Baker, S. M., Rattray, M., Kouskoff, V. & Lacaud, G., 20 Jan 2022, In: Blood. 139, 3, p. 343-356 14 p.

    Research output: Contribution to journalArticlepeer-review

  4. 2021
  5. Published

    Scalable inference of transcriptional kinetic parameters from MS2 time series data

    Bowles, J., Hoppe, C., Ashe, H. & Rattray, M., 12 Nov 2021, In: Bioinformatics (Oxford, England).

    Research output: Contribution to journalArticlepeer-review

  6. Published

    Inferring kinetic parameters of oscillatory gene regulation from single cell time-series data

    Burton, J., Manning, C. S., Rattray, M., Papalopulu, N. & Kursawe, J., 29 Sep 2021, In: Journal of the Royal Society Interface. 18, 182

    Research output: Contribution to journalArticlepeer-review

  7. Published

    Chromatin Looping Links Target Genes with Genetic Risk Loci for Dermatological Traits

    Shi, C., Ray-Jones, H., Ding, J., Duffus, K., Fu, Y., Gaddi, V. P., Gough, O., Hankinson, J., Martin, P., McGovern, A., Yarwood, A., Gaffney, P., Eyre, S., Rattray, M., Warren, R. B. & Orozco, G., 1 Aug 2021, In: The Journal of Investigative Dermatology. 141, 8, p. 1975-1984 10 p.

    Research output: Contribution to journalArticlepeer-review

  8. Accepted/In press

    Non-parametric modelling of temporal and spatial counts data from RNA-seq experiments

    Bin Tayyash, N., Georgaka, S., John, ST., Ahmed, S., Boukouvalas, A., Hensman, J. & Rattray, M., 28 Jun 2021, (Accepted/In press) In: Bioinformatics (Oxford, England).

    Research output: Contribution to journalArticlepeer-review

  9. Published

    P058 Persistence of neutrophil abnormalities in COVID-19 convalescence

    Williams, T., Kästele, V., Mann, E., Knight, S., Menon, M., Jagger, C., Khan, S., Konkel, J., Shaw, T., Rattray, M., Pearmain, L., Horsley, A., Ustianowski, A., Prise, I. & Hussell, T., Apr 2021, In: Rheumatology (Oxford, England).

    Research output: Contribution to journalArticle

  10. 2020
  11. Published

    HOX paralogs selectively convert binding of ubiquitous transcription factors into tissue-specific patterns of enhancer activation

    Bridoux, L., Zarrineh, P., Mallen, J., Phuycharoen, M., Latorre, V., Ladam, F., Losa, M., Baker, S. M., Sagerstrom, C., Mace, K. A., Rattray, M. & Bobola, N., 14 Dec 2020, In: PLoS Genetics. 16, 12, p. e1009162 e1009162.

    Research output: Contribution to journalArticlepeer-review

  12. Published

    A model of k-mer surprisal to quantify local sequence information content surrounding splice regions

    Humphrey, S., Kerr, A., Rattray, M., Dive, C. & Miller, C., 4 Nov 2020, In: PeerJ.

    Research output: Contribution to journalArticlepeer-review

  13. Published

    Longitudinal immune profiling reveals key myeloid signatures associated with COVID-19

    Mann, E. R., Menon, M., Knight, S. B., Konkel, J. E., Jagger, C., Shaw, T. N., Krishnan, S., Rattray, M., Ustianowski, A., Bakerly, N. D., Dark, P., Lord, G., Simpson, A., Felton, T., Ho, L-P., Feldmann, M., Grainger, J. R., Hussell, T., Scott, N. & Mathioudakis, A., 18 Sep 2020, In: Science Immunology. 5, 51, eabd6197.

    Research output: Contribution to journalArticlepeer-review

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