Prof Magnus Rattray

Professor Computational &Systems Biology

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Publications

  1. 2018
  2. Accepted/In press

    Classifying cells with Scasat, a single-cell ATAC-seq analysis tool

    Murtuza Baker, S., Rogerson, C., Hayes, A., Sharrocks, A. & Rattray, M. 1 Oct 2018 (Accepted/In press) In : Nucleic Acids Research.

    Research output: Contribution to journalArticle

  3. E-pub ahead of print

    GrandPrix: Scaling up the Bayesian GPLVM for single-cell data

    Ahmed, S., Rattray, M. & Boukouvalas, A. 2 Jul 2018 In : Bioinformatics.

    Research output: Contribution to journalArticle

  4. Published

    BGP: identifying gene-specific branching dynamics from single cell data with a branching Gaussian process

    Boukouvalas, A., Hensman, J. & Rattray, M. 29 May 2018 In : Genome Biology. 19, 65

    Research output: Contribution to journalArticle

  5. Published

    Cytokine responses to rhinovirus and development of asthma, allergic sensitization and respiratory infections during childhood

    Custovic, A., Belgrave, D., Lin, L., Bakhsoliani, E., Telcian, A. G., Solari, R., Murray, C., Walton, R. P., Curtin, J., Edwards, M. R., Simpson, A., Rattray, M. & Johnston, S. L. 15 May 2018 In : American Journal of Respiratory and Critical Care Medicine. 197, 10

    Research output: Contribution to journalArticle

  6. Published

    Evolution of IgE responses to multiple allergen components throughout childhood

    Howard, R., Belgrave, D., Papastamoulis, P., Simpson, A., Rattray, M. & Custovic, A. 2018 In : Journal of Allergy and Clinical Immunology.

    Research output: Contribution to journalArticle

  7. Published

    REVERBa couples the circadian clock to hepatic glucocorticoid action

    Caratti, G. , Iqbal, M. , Hunter, L. , Kim, D. , Wang, P. , Vonslow, R. M. , Begley, N. , Tetley, A. J. , Woodburn, J. L. , Pariollaud, M. , Maidstone, R. , Donaldson, I. J. , Zhang, Z. , Ince, L. M. , Kitchen, G. , Baxter, M. , Poolman, T. M. , Daniels, D. A. , Stirling, D. R. , Brocker, C. & 6 others Gonzalez, F., Loudon, A. S., Bechtold, D. A., Rattray, M., Matthews, L. C. & Ray, D. W. 2018 In : The Journal of clinical investigation.

    Research output: Contribution to journalArticle

  8. 2017
  9. Published

    Efficient Inference for Sparse Latent Variable Models of Transcriptional Regulation

    Dai, Z., Iqbal, M., Lawrence, N. D. & Rattray, M. 1 Dec 2017 In : Bioinformatics. 33, 23, p. 3776–3783

    Research output: Contribution to journalArticle

  10. Published

    Predicting stimulation-dependent 1 enhancer-promoter interactions from 2 ChIP-Seq time course data

    Dzida, T., Iqbal, M., Charapitsa, I., Stunnenberg, H., Matarese, F., Honkela, A. & Rattray, M. 28 Sep 2017 In : PeerJ. 5

    Research output: Contribution to journalArticle

  11. Published

    BayesBinMix: an R Package for Model Based Clustering of Multivariate Binary Data

    Papastamoulis, P. & Rattray, M. 10 May 2017 In : The R Journal.

    Research output: Contribution to journalArticle

  12. Published

    A Bayesian model selection approach for identifying differentially expressed transcripts from RNA-Seq data

    Papastamoulis, P. & Rattray, M. 2017 In : Journal of the Royal Statistical Society. Series C: Applied Statistics.

    Research output: Contribution to journalArticle

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