Prof Magnus Rattray

Professor Computational &Systems Biology

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Publications

  1. 2019
  2. Published

    HiChIP-Peaks: A HiChIP peak calling algorithm

    Shi, C., Rattray, M. & Orozco, G., 27 Jun 2019, bioRxiv

    Research output: Other contribution

  3. Published

    Quantitative single-cell live imaging links HES5 dynamics with cell-state and fate in murine neurogenesis

    Manning, C., Biga, V., Boyd, J., Kursawe, J., Ymisson, B., Spiller, D., Sanderson, C. M., Galla, T., Rattray, M. & Papalopulu, A., 27 Jun 2019, In : Nature Communications. 2835 .

    Research output: Contribution to journalArticle

  4. Published

    Classifying cells with Scasat, a single-cell ATAC-seq analysis tool

    Murtuza Baker, S., Rogerson, C., Hayes, A., Sharrocks, A. & Rattray, M., 25 Jan 2019, In : Nucleic acids research. 47, 2

    Research output: Contribution to journalArticle

  5. Published

    Bayesian Detection of Piecewise Linear Trends in Replicated Time-Series with Application to Growth Data Modelling

    Papastamoulis, P., Furukawa, T., van Rhijn, N., Bromley, M., Bignell, E. & Rattray, M., 2019, In : International Journal of Biostatistics.

    Research output: Contribution to journalArticle

  6. Published

    Genome-wide effect of pulmonary airway epithelial cell–specific Bmal1 deletion

    Zhang, Z., Hunter, L., Wu, G., Maidstone, R., Mizoro, Y., Vonslow, R., Fife, M., Hopwood, T., Begley, N., Saer, B., Wang, P., Cunningham, P., Baxter, M., Durrington, H., Blaikley, J. F., Hussell, T., Rattray, M., Hogenesch, J. B., Gibbs, J., Ray, D. W. & 1 others, Loudon, A. S. I., 2019, In : The FASEB journal : official publication of the Federation of American Societies for Experimental Biology. p. fj.201801682R

    Research output: Contribution to journalArticle

  7. Published

    Rheumatoid arthritis reprograms circadian output pathways

    Poolman, T. M., Gibbs, J., Walker, A. L., Dickson, S., Farrell, L., Hensman, J., Kendall, A. C., Maidstone, R., Warwood, S., Loudon, A., Rattray, M., Bruce, I. N., Nicolaou, A. & Ray, D. W., 2019, In : Arthritis Research & Therapy. 21, 1, 47.

    Research output: Contribution to journalArticle

  8. 2018
  9. Published

    REVERBa couples the circadian clock to hepatic glucocorticoid action

    Caratti, G., Iqbal, M., Hunter, L., Kim, D., Wang, P., Vonslow, R. M., Begley, N., Tetley, A. J., Woodburn, J. L., Pariollaud, M., Maidstone, R., Donaldson, I. J., Zhang, Z., Ince, L. M., Kitchen, G., Baxter, M., Poolman, T. M., Daniels, D. A., Stirling, D. R., Brocker, C. & 6 others, Gonzalez, F., Loudon, A. S., Bechtold, D. A., Rattray, M., Matthews, L. C. & Ray, D. W., 1 Oct 2018, In : The Journal of clinical investigation. 128, 10, p. 4454-4471

    Research output: Contribution to journalArticle

  10. E-pub ahead of print

    GrandPrix: Scaling up the Bayesian GPLVM for single-cell data

    Ahmed, S., Rattray, M. & Boukouvalas, A., 2 Jul 2018, In : Bioinformatics.

    Research output: Contribution to journalArticle

  11. Published

    BGP: identifying gene-specific branching dynamics from single cell data with a branching Gaussian process

    Boukouvalas, A., Hensman, J. & Rattray, M., 29 May 2018, In : Genome biology. 19, 65

    Research output: Contribution to journalArticle

  12. Published

    Cytokine responses to rhinovirus and development of asthma, allergic sensitization and respiratory infections during childhood

    Custovic, A., Belgrave, D., Lin, L., Bakhsoliani, E., Telcian, A. G., Solari, R., Murray, C., Walton, R. P., Curtin, J., Edwards, M. R., Simpson, A., Rattray, M. & Johnston, S. L., 15 May 2018, In : American Journal of Respiratory and Critical Care Medicine. 197, 10

    Research output: Contribution to journalArticle

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