Prof Carole Goble

Professor

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Publications

  1. 2022
  2. Published

    Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language

    Crusoe, M. R., Abeln, S., Iosup, A., Amstutz, P., Chilton, J., Tijanić, N., Ménager, H., Soiland-Reyes, S., Gavrilović, B., Goble, C. A. & The CWL Community, 20 May 2022, In: Communications of the ACM. 65, 6, p. 54–63 10 p.

    Research output: Contribution to journalArticlepeer-review

  3. E-pub ahead of print

    Selection of data sets for FAIRification in drug discovery and development: Which, why, and how?

    Alharbi, E., Gadiya, Y., Henderson, D., Zaliani, A., Delfin-rossaro, A., Cambon-thomsen, A., Kohler, M., Witt, G., Welter, D., Juty, N., Jay, C., Engkvist, O., Goble, C., Reilly, D. S., Satagopam, V., Ioannidis, V., Gu, W. & Gribbon, P., 17 May 2022, (E-pub ahead of print) In: Drug discovery today. (in press)

    Research output: Contribution to journalArticlepeer-review

  4. Published

    Ten Simple Rules for making a software tool workflow-ready

    Brack, P., Crowther, P., Soiland-Reyes, S., Owen, S., Lowe, D., Williams, A. R., Groom, Q., Dillen, M., Coppens, F., Grüning, B., Eguinoa, I., Ewels, P. & Goble, C., 24 Mar 2022, In: PLoS computational biology. 18, 3, e1009823.

    Research output: Contribution to journalArticlepeer-review

  5. Published

    FAIR Principles for Research Software (FAIR4RS Principles)

    Hong, N. P. C., Katz, D. S., Barker, M., Lamprecht, A-L., Martinez, C., Psomopoulos, F. E., Harrow, J., Castro, L. J., Gruenpeter, M., Martinez, P. A., Honeyman, T., Struck, A., Lee, A., Loewe, A., Werkhoven, B. V., Garijo, D., Plomp, E., Genova, F., Shanahan, H., Hellström, M. & 46 others, Sandström, M., Sinha, M., Kuzak, M., Herterich, P., Islam, S., Sansone, S-A., Pollard, T., Atmojo, U. D., Williams, A., Czerniak, A., Niehues, A., Fouilloux, A. C., Desinghu, B., Goble, C., Richard, C., Gray, C., Erdmann, C., Nüst, D., Tartarini, D., Ranguelova, E., Anzt, H., Todorov, I., McNally, J., Burnett, J., Garrido-Sánchez, J., Belhajjame, K., Sesink, L., Hwang, L., Tovani-Palone, M. R., Wilkinson, M. D., Servillat, M., Liffers, M., Fox, M., Miljković, N., Lynch, N., Lavanchy, P. M., Gesing, S., Stevens, S., Cuesta, S. M., Peroni, S., Soiland-Reyes, S., Bakker, T., Rabemanantsoa, T., Sochat, V., Yehudi, Y. & WG, FAIRRS., 16 Mar 2022

    Research output: Book/ReportOther report

  6. Published

    The Specimen Data Refinery: A canonical workflow framework and FAIR Digital Object approach to speeding up digital mobilisation of natural science collections

    Hardisty, A., Brack, P., Goble, C., Livermore, L., Scott, B., Groom, Q., Owen, S. & Soiland-Reyes, S., 7 Mar 2022, In: Data Intelligence. 4, 2

    Research output: Contribution to journalArticlepeer-review

  7. Published

    Packaging research artefacts with RO-Crate

    Soiland-Reyes, S., Sefton, P., Crosas, M., Castro, L. J., Coppens, F., Fernández, J. M., Garijo, D., Grüning, B., La Rosa, M., Leo, S., Ó Carragáin, E., Portier, M., Trisovic, A., RO-Crate Community, Groth, P. & Goble, C., 4 Jan 2022, In: Data Science. p. 1-42 42 p.

    Research output: Contribution to journalArticlepeer-review

  8. 2021
  9. Published

    A Community Roadmap for Scientific Workflows Research and Development

    Da Silva, R. F., Casanova, H., Chard, K., Altintas, I., Badia, R. M., Balis, B., Coleman, T., Coppens, F., Di Natale, F., Enders, B., Fahringer, T., Filgueira, R., Fursin, G., Garijo, D., Goble, C., Howell, D., Jha, S., Katz, D. S., Laney, D., Leser, U. & 9 others, Malawski, M., Mehta, K., Pottier, L., Ozik, J., Peterson, J. L., Ramakrishnan, L., Soiland-reyes, S., Thain, D. & Wolf, M., 28 Dec 2021, p. 81-90. 10 p.

    Research output: Contribution to conferencePaperpeer-review

  10. Published

    Editorial on Machine Learning, AI and Big Data Methods and Findings for COVID-19

    Chang, V., Goble, C., Ramachandran, M., Deborah, L. J. & Behringer, R., 3 Nov 2021, In: Information Systems Frontiers. 23, 6, p. 1363-1367

    Research output: Contribution to journalArticle

  11. Published

    COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

    Ostaszewski, M., Niarakis, A., Mazein, A., Kuperstein, I., Phair, R., Orta‐resendiz, A., Singh, V., Aghamiri, S. S., Acencio, M. L., Glaab, E., Ruepp, A., Fobo, G., Montrone, C., Brauner, B., Frishman, G., Monraz Gómez, L. C., Somers, J., Hoch, M., Kumar Gupta, S., Scheel, J. & 119 others, Borlinghaus, H., Czauderna, T., Schreiber, F., Montagud, A., Ponce De Leon, M., Funahashi, A., Hiki, Y., Hiroi, N., Yamada, T. G., Dräger, A., Renz, A., Naveez, M., Bocskei, Z., Messina, F., Börnigen, D., Fergusson, L., Conti, M., Rameil, M., Nakonecnij, V., Vanhoefer, J., Schmiester, L., Wang, M., Ackerman, E. E., Shoemaker, J. E., Zucker, J., Oxford, K., Teuton, J., Kocakaya, E., Summak, G. Y., Hanspers, K., Kutmon, M., Coort, S., Eijssen, L., Ehrhart, F., Rex, D. A. B., Slenter, D., Martens, M., Pham, N., Haw, R., Jassal, B., Matthews, L., Orlic‐milacic, M., Senff-ribeiro, A., Rothfels, K., Shamovsky, V., Stephan, R., Sevilla, C., Varusai, T., Ravel, J., Fraser, R., Ortseifen, V., Marchesi, S., Gawron, P., Smula, E., Heirendt, L., Satagopam, V., Wu, G., Riutta, A., Golebiewski, M., Owen, S., Goble, C., Hu, X., Overall, R. W., Maier, D., Bauch, A., Gyori, B. M., Bachman, J. A., Vega, C., Grouès, V., Vazquez, M., Porras, P., Licata, L., Iannuccelli, M., Sacco, F., Nesterova, A., Yuryev, A., De Waard, A., Turei, D., Luna, A., Babur, O., Soliman, S., Valdeolivas, A., Esteban‐medina, M., Peña‐chilet, M., Rian, K., Helikar, T., Puniya, B. L., Modos, D., Treveil, A., Olbei, M., De Meulder, B., Ballereau, S., Dugourd, A., Naldi, A., Noël, V., Calzone, L., Sander, C., Demir, E., Korcsmaros, T., Freeman, T. C., Augé, F., Beckmann, J. S., Hasenauer, J., Wolkenhauer, O., Willighagen, E. L., Pico, A. R., Evelo, C. T., Gillespie, M. E., Stein, L. D., Hermjakob, H., D'eustachio, P., Saez‐rodriguez, J., Dopazo, J., Valencia, A., Kitano, H., Barillot, E., Auffray, C., Balling, R. & Schneider, R., 19 Oct 2021, In: Molecular Systems Biology. 17, 10, e10387.

    Research output: Contribution to journalArticlepeer-review

  12. Published
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Research output: Contribution to journalArticlepeer-review