Mr Alan Williams

Senior Research Software Engineer

Affiliations:
Links:
Full contact details
ORCID: 0000-0003-3156-2105
View graph of relations

Publications

1 - 20 out of 37Page size: 20
  1. 2020
  2. Published

    Landscape Analysis for the Specimen Data Refinery

    Walton, S., Livermore, L., Bánki, O., Cubey, R., Drinkwater, R., Englund, M., Goble, C., Groom, Q., Kermorvant, C., Rey, I., Santos, C., Scott, B., Williams, A. & Wu, Z., 14 Aug 2020, In: Research Ideas and Outcomes. 6, 25 p., e57602.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.3897/rio.6.e57602
  3. 2018
  4. Accepted/In press

    FAIR Bioinformatics computation and data management: FAIRDOM and the Norwegian Digital Life initiative

    Stanford, N., Bacall, F., Zamanzad Ghavidel, F., Golebiewski, M., Jonassen, I., Kleppe, R., Krebs, O., Leonov, H., Owen, S., Peterson, K., Rey, M., Soiland-Reyes, S., Tekle, K., Weiderman, A., Williams, A., Wittig, U., Wolstencroft, K., Goksøyr, A., Snoep, J., Vik, J. O. & 2 others, Müller, W. & Goble, C., 4 Sep 2018, (Accepted/In press). 4 p.

    Research output: Contribution to conference › Abstract › peer-review

  5. 2017
  6. Published

    Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.

    McMurry, J. A., Juty, N., Blomberg, N., Burdett, T., Conlin, T., Conte, N., Courtot, M., Deck, J., Dumontier, M., Fellows, D., Gonzalez-Beltran, A., Gormanns, P., Grethe, J., Hastings, J., Hériché, J-K., Hermjakob, H., Ison, J. C., Jimenez, R. C., Jupp, S., Kunze, J. & 24 others, Laibe, C., Le Novère, N., Malone, J., Martin, M. J., McEntyre, J. R., Morris, C., Muilu, J., Müller, W., Rocca-Serra, P., Sansone, S. A., Sariyar, M., Snoep, J. L., Soiland-Reyes, S., Stanford, N. J., Swainston, N., Washington, N., Williams, A. R., Wimalaratne, S. M., Winfree, L. M., Wolstencroft, K., Goble, C., Mungall, C. J., Haendel, M. A. & Parkinson, H., 29 Jun 2017, In: PLoS Biology. 15, 6, 18 p., e2001414.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1371/journal.pbio.2001414
  7. Published

    biochem4j: integrated and extensible biochemical knowledge through graph databases

    Swainston, N., Batista-Navarro, R. T., Carbonell, P., Dobson, P., Dunstan, M., Jervis, A., Vinaixa, M., Williams, A., Ananiadou, S., Faulon, J-L., Pedrosa Mendes, P., Kell, D., Scrutton, N. & Breitling, R., 2017, In: PLoS ONE. 12, 7, e0179130.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1371/journal.pone.0179130
  8. 2016
  9. Published

    BioVeL: A virtual laboratory for data analysis and modelling in biodiversity science and ecology

    Hardisty, A. R., Bacall, F., Beard, N., Balcázar-Vargas, M. P., Balech, B., Barcza, Z., Bourlat, S. J., Giovanni, R., Jong, Y., Leo, F., Dobor, L., Donvito, G., Fellows, D., Guerra, A. F., Ferreira, N., Fetyukova, Y., Fosso, B., Giddy, J., Goble, C., Güntsch, A. & 32 others, Haines, R., Ernst, V. H., Hettling, H., Hidy, D., Horváth, F., Ittzés, D., Ittzés, P., Jones, A., Kottmann, R., Kulawik, R., Leidenberger, S., Lyytikäinen-Saarenmaa, P., Mathew, C., Morrison, N., Nenadic, A., Hidalga, A. N., Obst, M., Oostermeijer, G., Paymal, E., Pesole, G., Pinto, S., Poigné, A., Fernandez, F. Q., Santamaria, M., Saarenmaa, H., Sipos, G., Sylla, K. H., Tähtinen, M., Vicario, S., Vos, R. A., Williams, A. & Yilmaz, P., 20 Oct 2016, In: Ecology. 16, 1, 49.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1186/s12898-016-0103-y
  10. Published

    SYNBIOCHEM - A SynBio foundry for the biosynthesis and sustainable production of fine and speciality chemicals.

    Carbonell, P., Currin, A., Dunstan, M., Fellows, D., Jervis, A., Rattray, N. J. W., Robinson, C. J., Swainston, N., Vinaixa, M., Williams, A., Yan, C., Barran, P., Breitling, R., Chen, G. G-Q., Faulon, J-L., Goble, C., Goodacre, R., Kell, D. B., Feuvre, R. L., Micklefield, J. & 4 others, Scrutton, N. S., Shapira, P., Takano, E. & Turner, N. J., 15 Jun 2016, In: Biochemical Society Transactions. 44, 3, p. 675-7

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1042/BST20160009
  11. Accepted/In press

    FAIRDOM: Reproducible Systems Biology through FAIR Asset Management

    Stanford, N., Bacall, F., Golebiewski, M., Krebs, O., Kuzyakiv, R., Nguyen, Q., Owen, S., Soiland-Reyes, S., Straszewski, J., van Niekerk, D., Williams, A., Wolstencroft, K., Malmström, L., Rinn, B., Snoep, J., Müller, W. & Goble, C., 2016, (Accepted/In press). 5 p.

    Research output: Contribution to conference › Paper › peer-review

  12. Published

    SYNBIOCHEM Synthetic Biology Research Centre, Manchester - A UK foundry for fine and speciality chemicals production

    Feuvre, R. L., Carbonell, P., Currin, A., Dunstan, M., Fellows, D., Jervis, A., Rattray, N. J. W., Robinson, C. J., Swainston, N., Vinaixa, M., Williams, A., Yan, C., Barran, P., Breitling, R., Chen, G. G-Q., Faulon, J-L., Goble, C., Goodacre, R., Kell, D. B., Micklefield, J. & 4 others, Scrutton, N. S., Shapira, P., Takano, E. & Turner, N. J., 2016, In: Synthetic and Systems Biotechnology.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1016/j.synbio.2016.07.001
  13. 2015
  14. Published

    Towards a Data Science Collaboratory

    Vanschoren, J., Bischl, B., Hutter, F., Sebag, M., Kegl, B., Schmid, M., Napolitano, G., Wolstencroft, K., Williams, A. & Lawrence, N., 1 Oct 2015, In: LNCS. 9385 , p. XIX-XXI 3 p.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1007/978-3-319-24465-5
  15. Published

    ENM Components: a new set of web service-based workflow components for ecological niche modelling

    De Giovanni, R., Williams, A., Hernandez Ernst, V., Kulawik, R., Quevedo Fernandez, F. & Hardisty, A., 1 Jul 2015, In: Ecography. 39, 4, p. 376-383 8 p.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1111/ecog.01552
  16. Published

    Mapping present and future potential distribution patterns for a meso-grazer guild in the Baltic Sea

    Leidenberger, S., De Giovanni, R., Kulawik, R., Williams, A. & Bourlat, S. J., 1 Feb 2015, In: Journal of Biogeography. 42, 2, p. 241-254 14 p.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1111/jbi.12395
  17. 2014
  18. Published

    Taverna Tutorials 2014-09-01 (Bonn): Training material

    Wolstencroft, K., Pawlik, A., Williams, A. R., Li, P., Morrison, N., Soiland-Reyes, S. & Brenninkmeijer, C., 1 Sep 2014

    Research output: Other contribution

    DOI: 10.5281/ZENODO.11590
  19. Published

    A semi-automated workflow for biodiversity data retrieval, cleaning, and quality control

    Mathew, C., Güntsch, A., Obst, M., Vicario, S., Haines, R., Williams, A., de Jong, Y. & Goble, C., 2014, In: Biodiversity data journal. 2, p. e4221

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.3897/BDJ.2.e4221
  20. Published

    DistillFlow: removing redundancy in scientific workflows

    Chen, J., Boulakia, S. C., Froidevaux, C., Goble, C. A., Missier, P. & Williams, A., 2014, Conference on Scientific and Statistical Database Management, SSDBM '14, Aalborg, Denmark, June 30 - July 02, 2014.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    DOI: 10.1145/2618243.2618287
  21. Published

    Distilling structure in Taverna scientific workflows: a refactoring approach.

    Cohen-Boulakia, S., Chen, J., Missier, P., Goble, C., Williams, A. & Froidevaux, C., 2014, In: BMC Bioinformatics. 15, p. S12

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1186/1471-2105-15-S1-S12
  22. Published

    Enriched biodiversity data as a resource and service

    Vos, R. A., Biserkov, J. V., Balech, B., Beard, N., Blissett, M., Brenninkmeijer, C., van Dooren, T., Eades, D., Gosline, G., Groom, Q. J., Hamann, T. D., Hettling, H., Hoehndorf, R., Holleman, A., Hovenkamp, P., Kelbert, P., King, D., Kirkup, D., Lammers, Y., DeMeulemeester, T. & 15 others, Mietchen, D., Miller, J. A., Mounce, R., Nicolson, N., Page, R., Pawlik, A., Pereira, S., Penev, L., Richards, K., Sautter, G., Shorthouse, D. P., Tähtinen, M., Weiland, C., Williams, A. & Sierra, S., 2014, In: Biodiversity data journal. 2, p. e1125

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.3897/BDJ.2.e1125
  23. 2013
  24. Published

    The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.

    Wolstencroft, K., Haines, R., Fellows, D., Williams, A., Withers, D., Owen, S., Soiland-Reyes, S., Dunlop, I., Nenadic, A., Fisher, P., Bhagat, J., Belhajjame, K., Bacall, F., Hardisty, A., Nieva de la Hidalga, A., Balcazar Vargas, M. P., Sufi, S. & Goble, C., Jul 2013, In: Nucleic acids research.. 41, p. W557-561

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1093/nar/gkt328
  25. 2012
  26. Published

    Distilling structure in scientific workflows

    Chen, J., Froidevaux, C., Goble, C., Williams, A. & Cohen-Boulakia, S., 2012, In: EMBnet.journal. 18, B

    Research output: Contribution to journal › Article › peer-review

  27. Published

    Opening new gateways to workflows for life scientists

    Karasavvas, K., Wolstencroft, K., Mina, E., Cruickshank, D., Williams, A., De Roure, D., Goble, C. & Roos, M., 2012, In: Studies in Health Technology and Informatics. 175, p. 131-141 10 p.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.3233/978-1-61499-054-3-131
  28. 2011
  29. Published

    Scufl2 – because a workflow is more than its definition

    Soiland-Reyes, S., Williams, A., Owen, S., Withers, D. & Goble, C., 15 Jun 2011, p. 37-37. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

Previous 1 2 Next

Research Explorer downloads

184
The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.

Research output: Contribution to journal › Article › peer-review

135
FAIR Bioinformatics computation and data management: FAIRDOM and the Norwegian Digital Life initiative

Research output: Contribution to conference › Abstract › peer-review

95
Taverna, reloaded

Research output: Contribution to journal › Article › peer-review

88
FAIRDOM: Reproducible Systems Biology through FAIR Asset Management

Research output: Contribution to conference › Paper › peer-review

74
Scufl2 – because a workflow is more than its definition

Research output: Contribution to conference › Abstract › peer-review