Mr Alan Williams

Senior Research Software Engineer

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ORCID: 0000-0003-3156-2105
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Publications

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  1. Published

    A generic framework for transforming EXPRESS information models

    Kahn, H., Filer, N., Williams, A. & Whitaker, N., Jun 2001, In: CAD Computer Aided Design. 33, 7, p. 501-510 9 p.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1016/S0010-4485(01)00049-5
  2. Published

    A semi-automated workflow for biodiversity data retrieval, cleaning, and quality control

    Mathew, C., Güntsch, A., Obst, M., Vicario, S., Haines, R., Williams, A., de Jong, Y. & Goble, C., 2014, In: Biodiversity data journal. 2, p. e4221

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.3897/BDJ.2.e4221
  3. Published

    An experimental workflow development platform for historical document digitisation and analysis

    Neudecker, C., Schlarb, S., Dogan, Z. M., Missier, P., Sufi, S., Williams, A. & Wolstencroft, K., 2011, ACM International Conference Proceeding Series|ACM Int. Conf. Proc. Ser.. Association for Computing Machinery, p. 161-168 7 p. (HIP '11).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    DOI: 10.1145/2037342.2037370
  4. Published

    biochem4j: integrated and extensible biochemical knowledge through graph databases

    Swainston, N., Batista-Navarro, R. T., Carbonell, P., Dobson, P., Dunstan, M., Jervis, A., Vinaixa, M., Williams, A., Ananiadou, S., Faulon, J-L., Pedrosa Mendes, P., Kell, D., Scrutton, N. & Breitling, R., 2017, In: PLoS ONE. 12, 7, e0179130.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1371/journal.pone.0179130
  5. Published

    BioVeL: A virtual laboratory for data analysis and modelling in biodiversity science and ecology

    Hardisty, A. R., Bacall, F., Beard, N., Balcázar-Vargas, M. P., Balech, B., Barcza, Z., Bourlat, S. J., Giovanni, R., Jong, Y., Leo, F., Dobor, L., Donvito, G., Fellows, D., Guerra, A. F., Ferreira, N., Fetyukova, Y., Fosso, B., Giddy, J., Goble, C., Güntsch, A. & 32 others, Haines, R., Ernst, V. H., Hettling, H., Hidy, D., Horváth, F., Ittzés, D., Ittzés, P., Jones, A., Kottmann, R., Kulawik, R., Leidenberger, S., Lyytikäinen-Saarenmaa, P., Mathew, C., Morrison, N., Nenadic, A., Hidalga, A. N., Obst, M., Oostermeijer, G., Paymal, E., Pesole, G., Pinto, S., Poigné, A., Fernandez, F. Q., Santamaria, M., Saarenmaa, H., Sipos, G., Sylla, K. H., Tähtinen, M., Vicario, S., Vos, R. A., Williams, A. & Yilmaz, P., 20 Oct 2016, In: Ecology. 16, 1, 49.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1186/s12898-016-0103-y
  6. Published

    Combining RapidMiner Operators with Bioinformatics Services - A Powerful Combination

    Jupp, S., Eales, J., Fischer, S., Land, S., Ramgolam, R., Williams, A. & Stevens, R., 2011, Proceedings of the 2nd RapidMiner Community Meeting and Conference. Fischer, S. & Mierswa, I. (eds.). p. 75-86 12 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  7. Published

    Community-driven computational biology with Debian and Taverna

    Moeller, S., Krabbenhoeft, H., Tille, A., Paleino, D., Williams, A., Wolstencroft, K., Goble, C. & Plessy, C., Jul 2010, BOSC 2010.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  8. Published

    Community-driven computational biology with Debian Linux

    Möller, S., Krabbenhöft, H. N., Tille, A., Paleino, D., Williams, A., Wolstencroft, K., Goble, C., Holland, R., Belhachemi, D. & Plessy, C., 21 Dec 2010, In: BMC Bioinformatics. 11, 12, S5.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1186/1471-2105-11-S12-S5
  9. Published

    Data integration in eHealth: A domain/disease specific roadmap

    Ure, J., Procter, R., Martone, M., Porteous, D., Lloyd, S., Lawrie, S., Job, D., Baldock, R., Philp, A., Liewald, D., Rakebrandt, F., Blaikie, A., McKay, C., Anderson, S., Ainsworth, J., Van Hemert, J., Blanquer, I., Sinnott, R., Barillot, C., Gibaud, F. B. & 17 others, Williams, A., Hartswood, M., Watson, P., Smith, L., Burger, A., Kennedy, J., Gonzalez-Velez, H., Stevens, R., Corcho, O., Morton, R., Linksted, P., Deschenes, M., McGilchrist, M., Johnson, P., Voss, A., Gertz, R. & Wardlaw, J., 2007, In: Studies in Health Technology and Informatics. 126, p. 144-153 9 p.

    Research output: Contribution to journal › Article › peer-review

  10. Published

    DistillFlow: removing redundancy in scientific workflows

    Chen, J., Boulakia, S. C., Froidevaux, C., Goble, C. A., Missier, P. & Williams, A., 2014, Conference on Scientific and Statistical Database Management, SSDBM '14, Aalborg, Denmark, June 30 - July 02, 2014.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    DOI: 10.1145/2618243.2618287
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Research Explorer downloads

184
The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.

Research output: Contribution to journal › Article › peer-review

135
FAIR Bioinformatics computation and data management: FAIRDOM and the Norwegian Digital Life initiative

Research output: Contribution to conference › Abstract › peer-review

95
Taverna, reloaded

Research output: Contribution to journal › Article › peer-review

88
FAIRDOM: Reproducible Systems Biology through FAIR Asset Management

Research output: Contribution to conference › Paper › peer-review

74
Scufl2 – because a workflow is more than its definition

Research output: Contribution to conference › Abstract › peer-review