Mr Alan Williams

(Former)

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Publications

  1. 2022
  2. Published

    Ten Simple Rules for making a software tool workflow-ready

    Brack, P., Crowther, P., Soiland-Reyes, S., Owen, S., Lowe, D., Williams, A. R., Groom, Q., Dillen, M., Coppens, F., Grüning, B., Eguinoa, I., Ewels, P. & Goble, C., 24 Mar 2022, In: PLoS computational biology. 18, 3, e1009823.

    Research output: Contribution to journalArticlepeer-review

  3. Published

    FAIR Principles for Research Software (FAIR4RS Principles)

    Hong, N. P. C., Katz, D. S., Barker, M., Lamprecht, A-L., Martinez, C., Psomopoulos, F. E., Harrow, J., Castro, L. J., Gruenpeter, M., Martinez, P. A., Honeyman, T., Struck, A., Lee, A., Loewe, A., Werkhoven, B. V., Garijo, D., Plomp, E., Genova, F., Shanahan, H., Hellström, M., & 46 othersSandström, M., Sinha, M., Kuzak, M., Herterich, P., Islam, S., Sansone, S-A., Pollard, T., Atmojo, U. D., Williams, A., Czerniak, A., Niehues, A., Fouilloux, A. C., Desinghu, B., Goble, C., Richard, C., Gray, C., Erdmann, C., Nüst, D., Tartarini, D., Ranguelova, E., Anzt, H., Todorov, I., McNally, J., Burnett, J., Garrido-Sánchez, J., Belhajjame, K., Sesink, L., Hwang, L., Tovani-Palone, M. R., Wilkinson, M. D., Servillat, M., Liffers, M., Fox, M., Miljković, N., Lynch, N., Lavanchy, P. M., Gesing, S., Stevens, S., Cuesta, S. M., Peroni, S., Soiland-Reyes, S., Bakker, T., Rabemanantsoa, T., Sochat, V., Yehudi, Y. & WG, FAIRRS., 16 Mar 2022

    Research output: Book/ReportOther report

  4. 2021
  5. Published

    Implementing FAIR Digital Objects in the EOSC-Life Workflow Collaboratory

    Goble, C., Soiland-Reyes, S., Bacall, F., Owen, S., Williams, A., Eguinoa, I., Droesbeke, B., Leo, S., Pireddu, L., Rodríguez-Navas, L., Fernández, J. M., Capella-Gutierrez, S., Ménager, H., Grüning, B., Serrano-Solano, B., Ewels, P. & Coppens, F., 1 Mar 2021, In: Zenodo.

    Research output: Contribution to journalArticle

  6. Published

    RO-Crate Metadata Specification 1.1.1

    Sefton, P., Carragáin, E. Ó., Soiland-Reyes, S., Corcho, O., Garijo, D., Palma, R., Coppens, F., Goble, C., Fernández, J. M., Chard, K., Gomez-Perez, J. M., Crusoe, M. R., Eguinoa, I., Juty, N., Holmes, K., Clark, J. A., Capella-Gutierrez, S., Gray, A. J. G., Owen, S., Williams, A. R., & 19 othersTartari, G., Bacall, F., Thelen, T., Ménager, H., Rodríguez-Navas, L., Walk, P., whitehead, B., Wilkinson, M., Groth, P., Bremer, E., Castro, LJ. G., Sebby, K., Kanitz, A., Trisovic, A., Kennedy, G., Graves, M., Koehorst, J., Leo, S. & Portier, M., 15 Feb 2021, researchobject.org.

    Research output: Book/ReportBook

  7. 2020
  8. Published

    RO-Crate Metadata Specification 1.1

    Sefton, P., Carragáin, E. Ó., Soiland-Reyes, S., Corcho, O., Garijo, D., Palma, R., Coppens, F., Goble, C., Fernández, J. M., Chard, K., Gomez-Perez, J. M., Crusoe, M. R., Eguinoa, I., Juty, N., Holmes, K., Clark, J. A., Capella-Gutierrez, S., Gray, A. J. G., Owen, S., Williams, A. R., & 18 othersTartari, G., Bacall, F., Thelen, T., Ménager, H., Rodríguez-Navas, L., Walk, P., whitehead, B., Wilkinson, M., Groth, P., Bremer, E., Castro, LJ. G., Sebby, K., Kanitz, A., Trisovic, A., Kennedy, G., Graves, M., Koehorst, J. & Leo, S., 30 Oct 2020, researchobject.org. 75 p.

    Research output: Book/ReportBook

  9. Published

    Landscape Analysis for the Specimen Data Refinery

    Walton, S., Livermore, L., Bánki, O., Cubey, R., Drinkwater, R., Englund, M., Goble, C., Groom, Q., Kermorvant, C., Rey, I., Santos, C., Scott, B., Williams, A. & Wu, Z., 14 Aug 2020, In: Research Ideas and Outcomes. 6, 25 p., e57602.

    Research output: Contribution to journalArticlepeer-review

  10. 2019
  11. Published

    RO-Crate Metadata Specification 1.0

    Sefton, P., Carragáin, E. Ó., Soiland-Reyes, S., Corcho, O., Garijo, D., Palma, R., Coppens, F., Goble, C., González, J. M. F., Chard, K., Gomez-Perez, J. M., Crusoe, M. R., Eguinoa, I., Juty, N., Holmes, K., Clark, J. A., Capella-Gutierrez, S., Gray, A. J. G., Owen, S., Williams, A. R., & 3 othersTartari, G., Bacall, F. & Thelen, T., 15 Nov 2019, Zenodo.

    Research output: Other contribution

  12. 2018
  13. Accepted/In press

    FAIR Bioinformatics computation and data management: FAIRDOM and the Norwegian Digital Life initiative

    Stanford, N., Bacall, F., Zamanzad Ghavidel, F., Golebiewski, M., Jonassen, I., Kleppe, R., Krebs, O., Leonov, H., Owen, S., Peterson, K., Rey, M., Soiland-Reyes, S., Tekle, K., Weiderman, A., Williams, A., Wittig, U., Wolstencroft, K., Goksøyr, A., Snoep, J., Vik, J. O., & 2 othersMüller, W. & Goble, C., 4 Sep 2018, (Accepted/In press). 4 p.

    Research output: Contribution to conferenceAbstractpeer-review

  14. 2017
  15. Published

    Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.

    McMurry, J. A., Juty, N., Blomberg, N., Burdett, T., Conlin, T., Conte, N., Courtot, M., Deck, J., Dumontier, M., Fellows, D., Gonzalez-Beltran, A., Gormanns, P., Grethe, J., Hastings, J., Hériché, J-K., Hermjakob, H., Ison, J. C., Jimenez, R. C., Jupp, S., Kunze, J., & 24 othersLaibe, C., Le Novère, N., Malone, J., Martin, M. J., McEntyre, J. R., Morris, C., Muilu, J., Müller, W., Rocca-Serra, P., Sansone, S. A., Sariyar, M., Snoep, J. L., Soiland-Reyes, S., Stanford, N. J., Swainston, N., Washington, N., Williams, A. R., Wimalaratne, S. M., Winfree, L. M., Wolstencroft, K., Goble, C., Mungall, C. J., Haendel, M. A. & Parkinson, H., 29 Jun 2017, In: PLoS Biology. 15, 6, 18 p., e2001414.

    Research output: Contribution to journalArticlepeer-review

  16. Published

    biochem4j: integrated and extensible biochemical knowledge through graph databases

    Swainston, N., Batista-Navarro, R. T., Carbonell, P., Dobson, P., Dunstan, M., Jervis, A., Vinaixa, M., Williams, A., Ananiadou, S., Faulon, J-L., Pedrosa Mendes, P., Kell, D., Scrutton, N. & Breitling, R., 2017, In: PLoS ONE. 12, 7, e0179130.

    Research output: Contribution to journalArticlepeer-review

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173

Research output: Contribution to journalArticlepeer-review

154

Research output: Contribution to journalArticlepeer-review

130

Research output: Contribution to conferencePaperpeer-review