Mr Alan Williams

Senior Research Software Engineer

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Publications

  1. 2020
  2. Published

    Landscape Analysis for the Specimen Data Refinery

    Walton, S., Livermore, L., Bánki, O., Cubey, R., Drinkwater, R., Englund, M., Goble, C., Groom, Q., Kermorvant, C., Rey, I., Santos, C., Scott, B., Williams, A. & Wu, Z., 14 Aug 2020, In : Research Ideas and Outcomes. 6, 25 p., e57602.

    Research output: Contribution to journalArticlepeer-review

  3. 2018
  4. Accepted/In press

    FAIR Bioinformatics computation and data management: FAIRDOM and the Norwegian Digital Life initiative

    Stanford, N., Bacall, F., Zamanzad Ghavidel, F., Golebiewski, M., Jonassen, I., Kleppe, R., Krebs, O., Leonov, H., Owen, S., Peterson, K., Rey, M., Soiland-Reyes, S., Tekle, K., Weiderman, A., Williams, A., Wittig, U., Wolstencroft, K., Goksøyr, A., Snoep, J., Vik, J. O. & 2 others, Müller, W. & Goble, C., 4 Sep 2018, (Accepted/In press). 4 p.

    Research output: Contribution to conferenceAbstractpeer-review

  5. 2017
  6. Published

    Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.

    McMurry, J. A., Juty, N., Blomberg, N., Burdett, T., Conlin, T., Conte, N., Courtot, M., Deck, J., Dumontier, M., Fellows, D., Gonzalez-Beltran, A., Gormanns, P., Grethe, J., Hastings, J., Hériché, J-K., Hermjakob, H., Ison, J. C., Jimenez, R. C., Jupp, S., Kunze, J. & 24 others, Laibe, C., Le Novère, N., Malone, J., Martin, M. J., McEntyre, J. R., Morris, C., Muilu, J., Müller, W., Rocca-Serra, P., Sansone, S. A., Sariyar, M., Snoep, J. L., Soiland-Reyes, S., Stanford, N. J., Swainston, N., Washington, N., Williams, A. R., Wimalaratne, S. M., Winfree, L. M., Wolstencroft, K., Goble, C., Mungall, C. J., Haendel, M. A. & Parkinson, H., 29 Jun 2017, In : PLoS Biology. 15, 6, 18 p., e2001414.

    Research output: Contribution to journalArticlepeer-review

  7. Published

    biochem4j: integrated and extensible biochemical knowledge through graph databases

    Swainston, N., Batista-Navarro, R. T., Carbonell, P., Dobson, P., Dunstan, M., Jervis, A., Vinaixa, M., Williams, A., Ananiadou, S., Faulon, J-L., Pedrosa Mendes, P., Kell, D., Scrutton, N. & Breitling, R., 2017, In : PLoS ONE. 12, 7, e0179130.

    Research output: Contribution to journalArticlepeer-review

  8. 2016
  9. Published

    BioVeL: A virtual laboratory for data analysis and modelling in biodiversity science and ecology

    Hardisty, A. R., Bacall, F., Beard, N., Balcázar-Vargas, M. P., Balech, B., Barcza, Z., Bourlat, S. J., Giovanni, R., Jong, Y., Leo, F., Dobor, L., Donvito, G., Fellows, D., Guerra, A. F., Ferreira, N., Fetyukova, Y., Fosso, B., Giddy, J., Goble, C., Güntsch, A. & 32 others, Haines, R., Ernst, V. H., Hettling, H., Hidy, D., Horváth, F., Ittzés, D., Ittzés, P., Jones, A., Kottmann, R., Kulawik, R., Leidenberger, S., Lyytikäinen-Saarenmaa, P., Mathew, C., Morrison, N., Nenadic, A., Hidalga, A. N., Obst, M., Oostermeijer, G., Paymal, E., Pesole, G., Pinto, S., Poigné, A., Fernandez, F. Q., Santamaria, M., Saarenmaa, H., Sipos, G., Sylla, K. H., Tähtinen, M., Vicario, S., Vos, R. A., Williams, A. & Yilmaz, P., 20 Oct 2016, In : Ecology. 16, 1, 49.

    Research output: Contribution to journalArticlepeer-review

  10. Published

    SYNBIOCHEM - A SynBio foundry for the biosynthesis and sustainable production of fine and speciality chemicals.

    Carbonell, P., Currin, A., Dunstan, M., Fellows, D., Jervis, A., Rattray, N. J. W., Robinson, C. J., Swainston, N., Vinaixa, M., Williams, A., Yan, C., Barran, P., Breitling, R., Chen, G. G-Q., Faulon, J-L., Goble, C., Goodacre, R., Kell, D. B., Feuvre, R. L., Micklefield, J. & 4 others, Scrutton, N. S., Shapira, P., Takano, E. & Turner, N. J., 15 Jun 2016, In : Biochemical Society Transactions. 44, 3, p. 675-7

    Research output: Contribution to journalArticlepeer-review

  11. Accepted/In press

    FAIRDOM: Reproducible Systems Biology through FAIR Asset Management

    Stanford, N., Bacall, F., Golebiewski, M., Krebs, O., Kuzyakiv, R., Nguyen, Q., Owen, S., Soiland-Reyes, S., Straszewski, J., van Niekerk, D., Williams, A., Wolstencroft, K., Malmström, L., Rinn, B., Snoep, J., Müller, W. & Goble, C., 2016, (Accepted/In press). 5 p.

    Research output: Contribution to conferencePaperpeer-review

  12. Published

    SYNBIOCHEM Synthetic Biology Research Centre, Manchester - A UK foundry for fine and speciality chemicals production

    Feuvre, R. L., Carbonell, P., Currin, A., Dunstan, M., Fellows, D., Jervis, A., Rattray, N. J. W., Robinson, C. J., Swainston, N., Vinaixa, M., Williams, A., Yan, C., Barran, P., Breitling, R., Chen, G. G-Q., Faulon, J-L., Goble, C., Goodacre, R., Kell, D. B., Micklefield, J. & 4 others, Scrutton, N. S., Shapira, P., Takano, E. & Turner, N. J., 2016, In : Synthetic and Systems Biotechnology.

    Research output: Contribution to journalArticlepeer-review

  13. 2015
  14. Published

    Towards a Data Science Collaboratory

    Vanschoren, J., Bischl, B., Hutter, F., Sebag, M., Kegl, B., Schmid, M., Napolitano, G., Wolstencroft, K., Williams, A. & Lawrence, N., 1 Oct 2015, In : LNCS. 9385 , p. XIX-XXI 3 p.

    Research output: Contribution to journalArticlepeer-review

  15. Published

    ENM Components: a new set of web service-based workflow components for ecological niche modelling

    De Giovanni, R., Williams, A., Hernandez Ernst, V., Kulawik, R., Quevedo Fernandez, F. & Hardisty, A., 1 Jul 2015, In : Ecography. 39, 4, p. 376-383 8 p.

    Research output: Contribution to journalArticlepeer-review

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Research output: Contribution to conferenceAbstractpeer-review

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Research output: Contribution to journalArticlepeer-review

85

Research output: Contribution to conferencePaperpeer-review

73

Research output: Contribution to conferenceAbstractpeer-review