MiRBase: Integrating microRNA annotation and deep-sequencing dataCitation formats

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MiRBase: Integrating microRNA annotation and deep-sequencing data. / Kozomara, Ana; Griffiths-Jones, Sam.

In: Nucleic acids research., Vol. 39, No. 1, 01.2011, p. D152-D157.

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Kozomara, Ana ; Griffiths-Jones, Sam. / MiRBase: Integrating microRNA annotation and deep-sequencing data. In: Nucleic acids research. 2011 ; Vol. 39, No. 1. pp. D152-D157.

Bibtex

@article{eb1a40b2dd8e40a3b9d81e6f7688fa7f,
title = "MiRBase: Integrating microRNA annotation and deep-sequencing data",
abstract = "MiRBase is the primary online repository for all microRNA sequences and annotation. The current release (miRBase 16) contains over 15 000 microRNA gene loci in over 140 species, and over 17 000 distinct mature microRNA sequences. Deepsequencing technologies have delivered a sharp rise in the rate of novel microRNA discovery. We have mapped reads from short RNA deep-sequencing experiments to microRNAs in miRBase and developed web interfaces to view these mappings. The user can view all read data associated with a given microRNA annotation, filter reads by experiment and count, and search for microRNAs by tissueand stage-specific expression. These data can be used as a proxy for relative expression levels of microRNA sequences, provide detailed evidence for microRNA annotations and alternative isoforms of mature microRNAs, and allow us to revisit previous annotations. miRBase is available online at: http://www.mirbase.org/. {\textcopyright} The Author(s) 2010.",
author = "Ana Kozomara and Sam Griffiths-Jones",
note = "BB/G022623/1, Biotechnology and Biological Sciences Research Council, United Kingdom, Wellcome Trust, United Kingdom",
year = "2011",
month = jan,
doi = "10.1093/nar/gkq1027",
language = "English",
volume = "39",
pages = "D152--D157",
journal = "Nucleic acids research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "1",

}

RIS

TY - JOUR

T1 - MiRBase: Integrating microRNA annotation and deep-sequencing data

AU - Kozomara, Ana

AU - Griffiths-Jones, Sam

N1 - BB/G022623/1, Biotechnology and Biological Sciences Research Council, United Kingdom, Wellcome Trust, United Kingdom

PY - 2011/1

Y1 - 2011/1

N2 - MiRBase is the primary online repository for all microRNA sequences and annotation. The current release (miRBase 16) contains over 15 000 microRNA gene loci in over 140 species, and over 17 000 distinct mature microRNA sequences. Deepsequencing technologies have delivered a sharp rise in the rate of novel microRNA discovery. We have mapped reads from short RNA deep-sequencing experiments to microRNAs in miRBase and developed web interfaces to view these mappings. The user can view all read data associated with a given microRNA annotation, filter reads by experiment and count, and search for microRNAs by tissueand stage-specific expression. These data can be used as a proxy for relative expression levels of microRNA sequences, provide detailed evidence for microRNA annotations and alternative isoforms of mature microRNAs, and allow us to revisit previous annotations. miRBase is available online at: http://www.mirbase.org/. © The Author(s) 2010.

AB - MiRBase is the primary online repository for all microRNA sequences and annotation. The current release (miRBase 16) contains over 15 000 microRNA gene loci in over 140 species, and over 17 000 distinct mature microRNA sequences. Deepsequencing technologies have delivered a sharp rise in the rate of novel microRNA discovery. We have mapped reads from short RNA deep-sequencing experiments to microRNAs in miRBase and developed web interfaces to view these mappings. The user can view all read data associated with a given microRNA annotation, filter reads by experiment and count, and search for microRNAs by tissueand stage-specific expression. These data can be used as a proxy for relative expression levels of microRNA sequences, provide detailed evidence for microRNA annotations and alternative isoforms of mature microRNAs, and allow us to revisit previous annotations. miRBase is available online at: http://www.mirbase.org/. © The Author(s) 2010.

U2 - 10.1093/nar/gkq1027

DO - 10.1093/nar/gkq1027

M3 - Article

C2 - 21037258

VL - 39

SP - D152-D157

JO - Nucleic acids research

JF - Nucleic acids research

SN - 0305-1048

IS - 1

ER -