CWL ViewerCitation formats

Standard

CWL Viewer : The Common Workflow Language Viewer. / Robinson, Mark; Soiland-Reyes, Stian; Crusoe, Michael R.; Goble, Carole.

2017. Poster session presented at Bioinformatics Open Source Conference (BOSC) 2017, Prague, Czech Republic.

Research output: Contribution to conferencePoster

Harvard

Robinson, M, Soiland-Reyes, S, Crusoe, MR & Goble, C 2017, 'CWL Viewer: The Common Workflow Language Viewer' Bioinformatics Open Source Conference (BOSC) 2017, Prague, Czech Republic, 22/07/17 - 23/07/17, . https://doi.org/10.7490/f1000research.1114375.1

APA

Robinson, M., Soiland-Reyes, S., Crusoe, M. R., & Goble, C. (2017). CWL Viewer: The Common Workflow Language Viewer. Poster session presented at Bioinformatics Open Source Conference (BOSC) 2017, Prague, Czech Republic. https://doi.org/10.7490/f1000research.1114375.1

Vancouver

Robinson M, Soiland-Reyes S, Crusoe MR, Goble C. CWL Viewer: The Common Workflow Language Viewer. 2017. Poster session presented at Bioinformatics Open Source Conference (BOSC) 2017, Prague, Czech Republic. https://doi.org/10.7490/f1000research.1114375.1

Author

Robinson, Mark ; Soiland-Reyes, Stian ; Crusoe, Michael R. ; Goble, Carole. / CWL Viewer : The Common Workflow Language Viewer. Poster session presented at Bioinformatics Open Source Conference (BOSC) 2017, Prague, Czech Republic.1 p.

Bibtex

@conference{b60c4d3c303b4b5494f09cb1e9059b20,
title = "CWL Viewer: The Common Workflow Language Viewer",
abstract = "The Common Workflow Language (CWL) project emerged from the BOSC 2014 Codefest as a grassroots, multi-vendor working group to tackle the portability of data analysis workflows. It’s specification for describing workflows and command line tools aims to make them portable and scalable across a variety of computing platforms. At its heart CWL is a set of structured text files (YAML) with various extensibility points to the format. However, the CWL syntax and multi-file collections are not conducive to workflow browsing, exchange and understanding: for thiswe need a visualization suite. CWL Viewer is a richly featured CWL visualization suite that graphically presents and lists the details of CWL workflows with their inputs, outputs and steps. It also packages the CWL files into a downloadable Research Object Bundle including attribution, versioning and dependency metadata in the manifest, allowing it to be easily shared. The tool operates over any workflow held in a GitHub repository. Other features include: path visualization from parents and children nodes; nested workflows support; workflow graph download in a range of image formats; a gallery of previously submitted workflows; and support for private git repositories and public GitHub including live updates over versioned workflows. The CWL Viewer is the de facto CWL visualization suite and has been enthusiastically received by the CWL community",
keywords = "cwl, workflow, research object, scientific workflows",
author = "Mark Robinson and Stian Soiland-Reyes and Crusoe, {Michael R.} and Carole Goble",
note = "Abstract submitted to BOSC 2017. After peer review, accepted as poster and talk. Poster published in F1000Research. Won F1000Research Poster Award at ISMB/ECCB 2017. How to cite this poster: Robinson M, Soiland-Reyes S, Crusoe MR and Goble C. CWL Viewer: the common workflow language viewer [version 1; not peer reviewed]. F1000Research 2017, 6(ISCB Comm J):1075 (poster) (doi: 10.7490/f1000research.1114375.1); Bioinformatics Open Source Conference (BOSC) 2017, BOSC ; Conference date: 22-07-2017 Through 23-07-2017",
year = "2017",
month = "7",
day = "6",
doi = "10.7490/f1000research.1114375.1",
language = "English",
url = "http://www.open-bio.org/wiki/BOSC_2017",

}

RIS

TY - CONF

T1 - CWL Viewer

T2 - The Common Workflow Language Viewer

AU - Robinson, Mark

AU - Soiland-Reyes, Stian

AU - Crusoe, Michael R.

AU - Goble, Carole

N1 - Abstract submitted to BOSC 2017. After peer review, accepted as poster and talk. Poster published in F1000Research. Won F1000Research Poster Award at ISMB/ECCB 2017. How to cite this poster: Robinson M, Soiland-Reyes S, Crusoe MR and Goble C. CWL Viewer: the common workflow language viewer [version 1; not peer reviewed]. F1000Research 2017, 6(ISCB Comm J):1075 (poster) (doi: 10.7490/f1000research.1114375.1)

PY - 2017/7/6

Y1 - 2017/7/6

N2 - The Common Workflow Language (CWL) project emerged from the BOSC 2014 Codefest as a grassroots, multi-vendor working group to tackle the portability of data analysis workflows. It’s specification for describing workflows and command line tools aims to make them portable and scalable across a variety of computing platforms. At its heart CWL is a set of structured text files (YAML) with various extensibility points to the format. However, the CWL syntax and multi-file collections are not conducive to workflow browsing, exchange and understanding: for thiswe need a visualization suite. CWL Viewer is a richly featured CWL visualization suite that graphically presents and lists the details of CWL workflows with their inputs, outputs and steps. It also packages the CWL files into a downloadable Research Object Bundle including attribution, versioning and dependency metadata in the manifest, allowing it to be easily shared. The tool operates over any workflow held in a GitHub repository. Other features include: path visualization from parents and children nodes; nested workflows support; workflow graph download in a range of image formats; a gallery of previously submitted workflows; and support for private git repositories and public GitHub including live updates over versioned workflows. The CWL Viewer is the de facto CWL visualization suite and has been enthusiastically received by the CWL community

AB - The Common Workflow Language (CWL) project emerged from the BOSC 2014 Codefest as a grassroots, multi-vendor working group to tackle the portability of data analysis workflows. It’s specification for describing workflows and command line tools aims to make them portable and scalable across a variety of computing platforms. At its heart CWL is a set of structured text files (YAML) with various extensibility points to the format. However, the CWL syntax and multi-file collections are not conducive to workflow browsing, exchange and understanding: for thiswe need a visualization suite. CWL Viewer is a richly featured CWL visualization suite that graphically presents and lists the details of CWL workflows with their inputs, outputs and steps. It also packages the CWL files into a downloadable Research Object Bundle including attribution, versioning and dependency metadata in the manifest, allowing it to be easily shared. The tool operates over any workflow held in a GitHub repository. Other features include: path visualization from parents and children nodes; nested workflows support; workflow graph download in a range of image formats; a gallery of previously submitted workflows; and support for private git repositories and public GitHub including live updates over versioned workflows. The CWL Viewer is the de facto CWL visualization suite and has been enthusiastically received by the CWL community

KW - cwl

KW - workflow

KW - research object

KW - scientific workflows

UR - https://view.commonwl.org/

UR - https://github.com/common-workflow-language/cwlviewer

UR - https://www.open-bio.org/w/images/4/42/BOSC2017-complete-program-compressed.pdf

UR - https://zenodo.org/record/826827

U2 - 10.7490/f1000research.1114375.1

DO - 10.7490/f1000research.1114375.1

M3 - Poster

ER -