Enriching Metabolic PATHwaY models with evidence from the literature (EMPATHY).

Project: Research

Publications

  1. 2020
  2. Published

    Adverse Drug Events and Medication Relation Extraction in EHRs with Ensemble Deep Learning Methods

    Christopoulou, F., Tran, T., Sahu, S., Miwa, M. & Ananiadou, S., 2020, In: Journal of the American Medical Informatics Association. 27, 1, p. 39-46 8 p.

    Research output: Contribution to journalArticlepeer-review

  3. Published

    An Ensemble of Neural Models for Nested Adverse Drug Events and Medication Extraction with Subwords

    Ju, M., Nguyen, N., Miwa, M. & Ananiadou, S., 2020, In: Journal of the American Medical Informatics Association. 27, 1, p. 22-30 9 p.

    Research output: Contribution to journalArticlepeer-review

  4. 2018
  5. Published

    Identification of research hypotheses and new knowledge from scientific literature

    Shardlow, M., Batista-Navarro, R. T., Thompson, P., McNaught, J. & Ananiadou, S., Dec 2018, In: BMC Medical Informatics and Decision Making. 18, 13 p., 46.

    Research output: Contribution to journalArticlepeer-review

  6. Published

    A Walk-based Model on Entity Graphs for Relation Extraction.

    Christopoulou, E., Miwa, M. & Ananiadou, S., 1 Aug 2018, p. 81-88. 7 p.

    Research output: Contribution to conferencePosterpeer-review

  7. Published

    Energetic evolution of cellular Transportomes

    Darbani, B., Kell, D. B. & Borodina, I., 30 May 2018, In: BMC Genomics. 19, 1, 418.

    Research output: Contribution to journalArticlepeer-review

  8. Published

    LitPathExplorer: A Confidence-based Visual Text Analytics Tool for Exploring Literature-Enriched Pathway Models

    Soto, A., Zerva, C., Batista-Navarro, R. T. & Ananiadou, S., 15 Apr 2018, In: Bioinformatics. 34, 8, p. 1389-1397

    Research output: Contribution to journalArticlepeer-review

  9. Published

    Annotation and Detection of Drug Effects in Text for Pharmacovigilance

    Thompson, P., Daikou, S., Ueno, K., Batista-Navarro, R. T., Tsujii, J. & Ananiadou, S., 2018, In: Journal of Cheminformatics. 10

    Research output: Contribution to journalArticlepeer-review

  10. Published

    Thalia: Semantic search engine for biomedical abstracts

    Soto, A., Przybyla, P. & Ananiadou, S., 2018, In: Bioinformatics.

    Research output: Contribution to journalArticlepeer-review

  11. 2017
  12. Published

    Using uncertainty to link and rank evidence from biomedical literature for model curation

    Zerva, C., Batista-Navarro, R. T., Day, P. & Ananiadou, S., 24 Jul 2017, In: Bioinformatics.

    Research output: Contribution to journalArticlepeer-review

  13. Published

    Supporting Biological Pathway Curation Through Text Mining

    Ananiadou, S. & Thompson, P., 23 Apr 2017, In: Communications in Computer and Information Science. p. 59-73 15 p.

    Research output: Contribution to journalArticlepeer-review

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