Enriching Metabolic PATHwaY models with evidence from the literature (EMPATHY).

Project: Research

Publications

  1. 2019
  2. Published

    Adverse Drug Events and Medication Relation Extraction in EHRs with Ensemble Deep Learning Methods

    Christopoulou, F., Tran, T., Sahu, S., Miwa, M. & Ananiadou, S., 7 Aug 2019, In : Journal of the American Medical Informatics Association.

    Research output: Contribution to journalArticle

  3. Published

    An Ensemble of Neural Models for Nested Adverse Drug Events and Medication Extraction with Subwords

    Ju, M., Nguyen, N., Miwa, M. & Ananiadou, S., 14 Jun 2019, In : Journal of the American Medical Informatics Association.

    Research output: Contribution to journalArticle

  4. 2018
  5. Published

    Identification of research hypotheses and new knowledge from scientific literature

    Shardlow, M., Batista-Navarro, R. T., Thompson, P., McNaught, J. & Ananiadou, S., 25 Jun 2018, In : BMC Medical Informatics and Decision Making. 18, 13 p., 46.

    Research output: Contribution to journalArticle

  6. Published

    LitPathExplorer: A Confidence-based Visual Text Analytics Tool for Exploring Literature-Enriched Pathway Models

    Soto, A., Zerva, C., Batista-Navarro, R. T. & Ananiadou, S., 15 Apr 2018, In : Bioinformatics. 34, 8, p. 1389-1397

    Research output: Contribution to journalArticle

  7. Published

    Annotation and Detection of Drug Effects in Text for Pharmacovigilance

    Thompson, P., Daikou, S., Ueno, K., Batista-Navarro, R. T., Tsujii, J. & Ananiadou, S., 2018, In : Journal of Cheminformatics. 10

    Research output: Contribution to journalArticle

  8. Published

    Thalia: Semantic search engine for biomedical abstracts

    Soto, A., Przybyla, P. & Ananiadou, S., 2018, In : Bioinformatics.

    Research output: Contribution to journalArticle

  9. 2017
  10. Published

    Using uncertainty to link and rank evidence from biomedical literature for model curation

    Zerva, C., Batista-Navarro, R. T., Day, P. & Ananiadou, S., 24 Jul 2017, In : Bioinformatics.

    Research output: Contribution to journalArticle

  11. Published

    Supporting Biological Pathway Curation Through Text Mining

    Ananiadou, S. & Thompson, P., 23 Apr 2017, In : Communications in Computer and Information Science. p. 59-73 15 p.

    Research output: Contribution to journalArticle

  12. Published

    biochem4j: integrated and extensible biochemical knowledge through graph databases

    Swainston, N., Batista-Navarro, R. T., Carbonell, P., Dobson, P., Dunstan, M., Jervis, A., Vinaixa, M., Williams, A., Ananiadou, S., Faulon, J-L., Pedrosa Mendes, P., Kell, D., Scrutton, N. & Breitling, R., 2017, In : PLoS ONE. 12, 7, e0179130.

    Research output: Contribution to journalArticle

  13. 2016
  14. Published

    Recon 2.2: from reconstruction to model of human metabolism

    Swainston, N., Smallbone, K., Hefzi, H., Dobson, P. D., Brewer, J., Hanscho, M., Zielinski, D. C., Ang, K. S., Gardiner, N., Gutierrez, J. M., Kyriakopoulos, S., Lakshmanan, M., Li, S., Liu, J. K., Martínez, V. S., Orellana, C. A., Quek, L-E., Thomas, A., Zanghellini, J., Borth, N. & 5 others, Lee, D-Y., Nielsen, L. K., Kell, D., Lewis, N. E. & Mendes, P., 1 Jul 2016, In : Metabolomics : Official journal of the Metabolomic Society. 12, p. 109

    Research output: Contribution to journalArticle

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